Chromosome territories, nuclear architecture and gene regulation in mammalian cells
The expression of genes is regulated at many levels. Perhaps the area in which least is
known is how nuclear organization influences gene expression. Studies of higher-order …
known is how nuclear organization influences gene expression. Studies of higher-order …
[HTML][HTML] CTCF: master weaver of the genome
JE Phillips, VG Corces - Cell, 2009 - cell.com
CTCF is a highly conserved zinc finger protein implicated in diverse regulatory functions,
including transcriptional activation/repression, insulation, imprinting, and X chromosome …
including transcriptional activation/repression, insulation, imprinting, and X chromosome …
[HTML][HTML] A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping
We use in situ Hi-C to probe the 3D architecture of genomes, constructing haploid and
diploid maps of nine cell types. The densest, in human lymphoblastoid cells, contains 4.9 …
diploid maps of nine cell types. The densest, in human lymphoblastoid cells, contains 4.9 …
Loop stacking organizes genome folding from TADs to chromosomes
Although population-level analyses revealed significant roles for CTCF and cohesin in
mammalian genome organization, their contributions at the single-cell level remain …
mammalian genome organization, their contributions at the single-cell level remain …
[图书][B] Evolution: a view from the 21st century
JA Shapiro - 2011 - books.google.com
James A. Shapiro proposes an important new paradigm for understanding biological
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …
CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus
E Splinter, H Heath, J Kooren, RJ Palstra… - Genes & …, 2006 - genesdev.cshlp.org
CTCF (CCCTC-binding factor) binds sites around the mouse β-globin locus that spatially
cluster in the erythroid cell nucleus. We show that both conditional deletion of CTCF and …
cluster in the erythroid cell nucleus. We show that both conditional deletion of CTCF and …
Boundary stacking interactions enable cross-TAD enhancer–promoter communication during limb development
TC Hung, DM Kingsley, AN Boettiger - Nature Genetics, 2024 - nature.com
Although promoters and their enhancers are frequently contained within a topologically
associating domain (TAD), some developmentally important genes have their promoter and …
associating domain (TAD), some developmentally important genes have their promoter and …
Insulators: exploiting transcriptional and epigenetic mechanisms
M Gaszner, G Felsenfeld - Nature Reviews Genetics, 2006 - nature.com
Insulators are DNA sequence elements that prevent inappropriate interactions between
adjacent chromatin domains. One type of insulator establishes domains that separate …
adjacent chromatin domains. One type of insulator establishes domains that separate …
Interchromosomal associations between alternatively expressed loci
The T-helper-cell 1 and 2 (TH1 and TH2) pathways, defined by cytokines interferon-γ (IFN-γ)
and interleukin-4 (IL-4), respectively, comprise two alternative CD4+ T-cell fates, with …
and interleukin-4 (IL-4), respectively, comprise two alternative CD4+ T-cell fates, with …