Chromosome territories, nuclear architecture and gene regulation in mammalian cells

T Cremer, C Cremer - Nature reviews genetics, 2001 - nature.com
The expression of genes is regulated at many levels. Perhaps the area in which least is
known is how nuclear organization influences gene expression. Studies of higher-order …

[HTML][HTML] CTCF: master weaver of the genome

JE Phillips, VG Corces - Cell, 2009 - cell.com
CTCF is a highly conserved zinc finger protein implicated in diverse regulatory functions,
including transcriptional activation/repression, insulation, imprinting, and X chromosome …

[HTML][HTML] A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

SSP Rao, MH Huntley, NC Durand, EK Stamenova… - Cell, 2014 - cell.com
We use in situ Hi-C to probe the 3D architecture of genomes, constructing haploid and
diploid maps of nine cell types. The densest, in human lymphoblastoid cells, contains 4.9 …

Loop stacking organizes genome folding from TADs to chromosomes

A Hafner, M Park, SE Berger, SE Murphy, EP Nora… - Molecular cell, 2023 - cell.com
Although population-level analyses revealed significant roles for CTCF and cohesin in
mammalian genome organization, their contributions at the single-cell level remain …

[图书][B] Evolution: a view from the 21st century

JA Shapiro - 2011 - books.google.com
James A. Shapiro proposes an important new paradigm for understanding biological
evolution, the core organizing principle of biology. Shapiro introduces crucial new molecular …

[图书][B] Genomes 5

TA Brown - 2023 - taylorfrancis.com
Genomes 5 has been completely revised and updated. It is a thoroughly modern textbook
about genomes and how they are investigated. As with previous Genomes editions …

CTCF mediates long-range chromatin looping and local histone modification in the β-globin locus

E Splinter, H Heath, J Kooren, RJ Palstra… - Genes & …, 2006 - genesdev.cshlp.org
CTCF (CCCTC-binding factor) binds sites around the mouse β-globin locus that spatially
cluster in the erythroid cell nucleus. We show that both conditional deletion of CTCF and …

Boundary stacking interactions enable cross-TAD enhancer–promoter communication during limb development

TC Hung, DM Kingsley, AN Boettiger - Nature Genetics, 2024 - nature.com
Although promoters and their enhancers are frequently contained within a topologically
associating domain (TAD), some developmentally important genes have their promoter and …

Insulators: exploiting transcriptional and epigenetic mechanisms

M Gaszner, G Felsenfeld - Nature Reviews Genetics, 2006 - nature.com
Insulators are DNA sequence elements that prevent inappropriate interactions between
adjacent chromatin domains. One type of insulator establishes domains that separate …

Interchromosomal associations between alternatively expressed loci

CG Spilianakis, MD Lalioti, T Town, GR Lee, RA Flavell - Nature, 2005 - nature.com
The T-helper-cell 1 and 2 (TH1 and TH2) pathways, defined by cytokines interferon-γ (IFN-γ)
and interleukin-4 (IL-4), respectively, comprise two alternative CD4+ T-cell fates, with …