The molecular cytoarchitecture of the adult mouse brain

J Langlieb, NS Sachdev, KS Balderrama, NM Nadaf… - Nature, 2023 - nature.com
The function of the mammalian brain relies upon the specification and spatial positioning of
diversely specialized cell types. Yet, the molecular identities of the cell types and their …

[HTML][HTML] Cellular anatomy of the mouse primary motor cortex

R Muñoz-Castañeda, B Zingg, KS Matho, X Chen… - Nature, 2021 - nature.com
An essential step toward understanding brain function is to establish a structural framework
with cellular resolution on which multi-scale datasets spanning molecules, cells, circuits and …

Tissue clearing and 3D reconstruction of digitized, serially sectioned slides provide novel insights into pancreatic cancer

AL Kiemen, AI Damanakis, AM Braxton, J He, D Laheru… - Med, 2023 - cell.com
Pancreatic cancer is currently the third leading cause of cancer death in the United States.
The clinical hallmarks of this disease include abdominal pain that radiates to the back, the …

Three-dimensional mapping of neurofibrillary tangle burden in the human medial temporal lobe

PA Yushkevich, M Muñoz López… - Brain, 2021 - academic.oup.com
Tau protein neurofibrillary tangles are closely linked to neuronal/synaptic loss and cognitive
decline in Alzheimer's disease and related dementias. Our knowledge of the pattern of …

Fluorescent transgenic mouse models for whole-brain imaging in health and disease

A Arias, L Manubens-Gil, M Dierssen - Frontiers in Molecular …, 2022 - frontiersin.org
A paradigm shift is occurring in neuroscience and in general in life sciences converting
biomedical research from a descriptive discipline into a quantitative, predictive, actionable …

[HTML][HTML] The cell type composition of the adult mouse brain revealed by single cell and spatial genomics

J Langlieb, NS Sachdev, KS Balderrama, NM Nadaf… - bioRxiv, 2023 - ncbi.nlm.nih.gov
The function of the mammalian brain relies upon the specification and spatial positioning of
diversely specialized cell types. Yet, the molecular identities of the cell types, and their …

Visualizing synaptic plasticity in vivo by large-scale imaging of endogenous AMPA receptors

AR Graves, RH Roth, HL Tan, Q Zhu, AM Bygrave… - Elife, 2021 - elifesciences.org
Elucidating how synaptic molecules such as AMPA receptors mediate neuronal
communication and tracking their dynamic expression during behavior is crucial to …

Early amygdala and ERC atrophy linked to 3D reconstruction of rostral neurofibrillary tau tangle pathology in Alzheimer's disease

KM Stouffer, C Chen, S Kulason, E Xu, MP Witter… - NeuroImage: Clinical, 2023 - Elsevier
Previous research has emphasized the unique impact of Alzheimer's Disease (AD)
pathology on the medial temporal lobe (MTL), a reflection that tau pathology is particularly …

Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections

KM Stouffer, A Trouvé, L Younes, M Kunst, L Ng… - Nature …, 2024 - nature.com
This paper explicates a solution to building correspondences between molecular-scale
transcriptomics and tissue-scale atlases. This problem arises in atlas construction and cross …

Projective diffeomorphic mapping of molecular digital pathology with tissue mri

KM Stouffer, MP Witter, DJ Tward… - Communications …, 2022 - nature.com
Reconstructing dense 3D anatomical coordinates from 2D projective measurements has
become a central problem in digital pathology for both animal models and human studies …