[HTML][HTML] A guide to systems-level immunomics
The immune system is highly complex and distributed throughout an organism, with
hundreds to thousands of cell states existing in parallel with diverse molecular pathways …
hundreds to thousands of cell states existing in parallel with diverse molecular pathways …
Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap
Pathway enrichment analysis helps researchers gain mechanistic insight into gene lists
generated from genome-scale (omics) experiments. This method identifies biological …
generated from genome-scale (omics) experiments. This method identifies biological …
Impaired mitochondrial oxidative phosphorylation limits the self-renewal of T cells exposed to persistent antigen
The majority of tumor-infiltrating T cells exhibit a terminally exhausted phenotype, marked by
a loss of self-renewal capacity. How repetitive antigenic stimulation impairs T cell self …
a loss of self-renewal capacity. How repetitive antigenic stimulation impairs T cell self …
Three differential expression analysis methods for RNA sequencing: limma, EdgeR, DESeq2
S Liu, Z Wang, R Zhu, F Wang, Y Cheng… - JoVE (Journal of Visualized …, 2021 - jove.com
RNA sequencing (RNA-seq) is one of the most widely used technologies in transcriptomics
as it can reveal the relationship between the genetic alteration and complex biological …
as it can reveal the relationship between the genetic alteration and complex biological …
[HTML][HTML] Brain motor and fear circuits regulate leukocytes during acute stress
The nervous and immune systems are intricately linked. Although psychological stress is
known to modulate immune function, mechanistic pathways linking stress networks in the …
known to modulate immune function, mechanistic pathways linking stress networks in the …
[PDF][PDF] Fusobacterium nucleatum promotes chemoresistance to colorectal cancer by modulating autophagy
TC Yu, F Guo, Y Yu, T Sun, D Ma, J Han, Y Qian… - Cell, 2017 - cell.com
Gut microbiota are linked to chronic inflammation and carcinogenesis. Chemotherapy failure
is the major cause of recurrence and poor prognosis in colorectal cancer patients. Here, we …
is the major cause of recurrence and poor prognosis in colorectal cancer patients. Here, we …
Haploinsufficiency leads to neurodegeneration in C9ORF72 ALS/FTD human induced motor neurons
An intronic GGGGCC repeat expansion in C9ORF72 is the most common cause of
amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), but the pathogenic …
amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD), but the pathogenic …
[HTML][HTML] Normalization and microbial differential abundance strategies depend upon data characteristics
S Weiss, ZZ Xu, S Peddada, A Amir, K Bittinger… - Microbiome, 2017 - Springer
Background Data from 16S ribosomal RNA (rRNA) amplicon sequencing present
challenges to ecological and statistical interpretation. In particular, library sizes often vary …
challenges to ecological and statistical interpretation. In particular, library sizes often vary …
[HTML][HTML] An essential role for the IL-2 receptor in Treg cell function
Regulatory T cells (Treg cells), which have abundant expression of the interleukin 2 receptor
(IL-2R), are reliant on IL-2 produced by activated T cells. This feature indicates a key role for …
(IL-2R), are reliant on IL-2 produced by activated T cells. This feature indicates a key role for …