Cre recombinase

GD Van Duyne - Mobile DNA III, 2015 - Wiley Online Library
The use of Cre recombinase to carry out conditional mutagenesis of transgenes and insert
DNA cassettes into eukaryotic chromosomes is widespread (1–9). Indeed, a PubMed search …

A common topology for bacterial and eukaryotic transcription initiation?

A Travers, G Muskhelishvili - EMBO reports, 2007 - embopress.org
DNA supercoiling is a major regulator of transcription in bacteria. Negative supercoiling acts
both by promoting the formation of nucleoprotein structures containing wrapped DNA and by …

Macrodomain organization of the Escherichia coli chromosome

M Valens, S Penaud, M Rossignol, F Cornet… - The EMBO …, 2004 - embopress.org
We have explored the Escherichia coli chromosome architecture by genetic dissection,
using a site‐specific recombination system that reveals the spatial proximity of distant DNA …

Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements

NJ Crisona, TR Strick, D Bensimon… - Genes & …, 2000 - genesdev.cshlp.org
We show that positively supercoiled [(+) SC] DNA is the preferred substrate for Escherichia
coli topoisomerase IV (topo IV). We measured topo IV relaxation of (−) and (+) supercoils in …

Crystal structure of a Flp recombinase–Holliday junction complex: assembly of an active oligomer by helix swapping

Y Chen, U Narendra, LE Iype, MM Cox, PA Rice - Molecular cell, 2000 - cell.com
The crystal structure of a Flp recombinase tetramer bound to a Holliday junction intermediate
has been determined at 2.65 Å resolution. Only one of Flp's two domains, containing the …

A structural basis for allosteric control of DNA recombination by λ integrase

T Biswas, H Aihara, M Radman-Livaja, D Filman… - Nature, 2005 - nature.com
Site-specific DNA recombination is important for basic cellular functions including viral
integration, control of gene expression, production of genetic diversity and segregation of …

Studies of global and local entanglements of individual protein chains using the concept of knotoids

D Goundaroulis, J Dorier, F Benedetti, A Stasiak - Scientific reports, 2017 - nature.com
We study here global and local entanglements of open protein chains by implementing the
concept of knotoids. Knotoids have been introduced in 2012 by Vladimir Turaev as a …

Spontaneous knotting and unknotting of flexible linear polymers: Equilibrium and kinetic aspects

L Tubiana, A Rosa, F Fragiacomo, C Micheletti - Macromolecules, 2013 - ACS Publications
We report on a computational study of the statics and dynamics of long flexible linear
polymers that spontaneously knot and unknot. Specifically, the equilibrium self …

The λ integrase site‐specific recombination pathway

A Landy - Mobile DNA III, 2015 - Wiley Online Library
The λ site‐specific recombination pathway has enjoyed the sequential attentions of
geneticists, biochemists, and structural biologists for more than 50 years. It has proven to be …

Conservation of writhe helicity under anti-parallel reconnection

CE Laing, RL Ricca, DWL Sumners - Scientific reports, 2015 - nature.com
Reconnection is a fundamental event in many areas of science, from the interaction of
vortices in classical and quantum fluids and magnetic flux tubes in magnetohydrodynamics …