Evaluation guidelines for machine learning tools in the chemical sciences
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
Exploration of ultralarge compound collections for drug discovery
WA Warr, MC Nicklaus, CA Nicolaou… - Journal of Chemical …, 2022 - ACS Publications
Designing new medicines more cheaply and quickly is tightly linked to the quest of exploring
chemical space more widely and efficiently. Chemical space is monumentally large, but …
chemical space more widely and efficiently. Chemical space is monumentally large, but …
Molecular de-novo design through deep reinforcement learning
M Olivecrona, T Blaschke, O Engkvist… - Journal of …, 2017 - Springer
This work introduces a method to tune a sequence-based generative model for molecular de
novo design that through augmented episodic likelihood can learn to generate structures …
novo design that through augmented episodic likelihood can learn to generate structures …
Polypharmacology by design: a medicinal chemist's perspective on multitargeting compounds
Multitargeting compounds comprising activity on more than a single biological target have
gained remarkable relevance in drug discovery owing to the complexity of multifactorial …
gained remarkable relevance in drug discovery owing to the complexity of multifactorial …
Counting on natural products for drug design
Natural products and their molecular frameworks have a long tradition as valuable starting
points for medicinal chemistry and drug discovery. Recently, there has been a revitalization …
points for medicinal chemistry and drug discovery. Recently, there has been a revitalization …
Leveraging molecular structure and bioactivity with chemical language models for de novo drug design
M Moret, I Pachon Angona, L Cotos, S Yan… - Nature …, 2023 - nature.com
Generative chemical language models (CLMs) can be used for de novo molecular structure
generation by learning from a textual representation of molecules. Here, we show that hybrid …
generation by learning from a textual representation of molecules. Here, we show that hybrid …
Beware of docking!
YC Chen - Trends in pharmacological sciences, 2015 - cell.com
Docking is now routine in virtual screening or lead optimization for drug screening and
design. The number of papers related to docking has dramatically increased over the past …
design. The number of papers related to docking has dramatically increased over the past …
Combining generative artificial intelligence and on-chip synthesis for de novo drug design
Automating the molecular design-make-test-analyze cycle accelerates hit and lead finding
for drug discovery. Using deep learning for molecular design and a microfluidics platform for …
for drug discovery. Using deep learning for molecular design and a microfluidics platform for …
Prospective de novo drug design with deep interactome learning
De novo drug design aims to generate molecules from scratch that possess specific
chemical and pharmacological properties. We present a computational approach utilizing …
chemical and pharmacological properties. We present a computational approach utilizing …
Automated de novo drug design: are we nearly there yet?
G Schneider, DE Clark - Angewandte Chemie International …, 2019 - Wiley Online Library
Medicinal chemistry and, in particular, drug design have often been perceived as more of an
art than a science. The many unknowns of human disease and the sheer complexity of …
art than a science. The many unknowns of human disease and the sheer complexity of …