The current landscape of epilepsy genetics: where are we, and where are we going?

SM Ruggiero, J Xian, I Helbig - Current opinion in neurology, 2023 - journals.lww.com
New approaches to gene discovery and characterization are advancing rapidly our
understanding of the genetic and phenotypic architecture of the epilepsies. This review …

Computational analysis of neurodevelopmental phenotypes: Harmonization empowers clinical discovery

D Lewis‐Smith, S Parthasarathy, J Xian… - Human …, 2022 - Wiley Online Library
Making a specific diagnosis in neurodevelopmental disorders is traditionally based on
recognizing clinical features of a distinct syndrome, which guides testing of its possible …

Enriching representation learning using 53 million patient notes through human phenotype ontology embedding

M Daniali, PD Galer, D Lewis-Smith… - Artificial intelligence in …, 2023 - Elsevier
Abstract The Human Phenotype Ontology (HPO) is a dictionary of> 15,000 clinical
phenotypic terms with defined semantic relationships, developed to standardize phenotypic …

Advances in big data and omics: Paving the way for discovery in childhood epilepsies

J Magielski, I McSalley, S Parthasarathy… - Current Problems in …, 2024 - Elsevier
The insights gained from big data and omics approaches have transformed the field of
childhood genetic epilepsy. With an increasing number of individuals receiving genetic …

Clinical signatures of genetic epilepsies precede diagnosis in electronic medical records of 32,000 individuals

PD Galer, S Parthasarathy, J Xian, JL McKee… - Genetics in …, 2024 - Elsevier
Purpose An early genetic diagnosis can guide the time-sensitive treatment of individuals
with genetic epilepsies. However, most genetic diagnoses occur long after disease onset …

Computation of longitudinal phenotypes in 466 individuals with a developmental and epileptic encephalopathy enables clinical trial readiness

E Brimble, J Kim, RL Martin, D McKnight, AMB Lacoste - medRxiv, 2023 - medrxiv.org
Electronic health records (EHRs) represent a rich data source to support precision medicine,
particularly in disorders with small and heterogeneous populations where longitudinal …

Natural language processing and expert follow-up establishes tachycardia association with CDKL5 deficiency disorder

A Ivaniuk, CM Boßelmann, X Zhang, MS John… - Genetics in Medicine …, 2024 - Elsevier
Purpose CDKL5 deficiency disorder (CDD) is a developmental and epileptic
encephalopathy with multisystemic comorbidities. Cardiovascular involvement in CDD was …

Quantitative EEG Spectral Features Differentiate Genetic Epilepsies and Predict Neurologic Outcomes

PD Galer, JL McKee, SM Ruggiero, MC Kaufman… - medRxiv, 2024 - medrxiv.org
EEG plays an integral part in the diagnosis and management of children with genetic
epilepsies. Nevertheless, how quantitative EEG features differ between genetic epilepsies …

Healthcare utilization and clinical characteristics of genetic epilepsy in electronic health records

CM Boßelmann, A Ivaniuk, M St John… - Brain …, 2024 - academic.oup.com
Understanding the clinical characteristics and medical treatment of individuals affected by
genetic epilepsies is instrumental in guiding selection for genetic testing, defining the …

Optimizing clinical interpretability of functional evidence in epilepsy-related ion channel variants

S Parthasarathy, SR Cohen, E Fitch, P Vaidiswaran… - bioRxiv, 2024 - biorxiv.org
Variants in genes encoding the voltage-gated ion channels are among the most common
monogenic causes of epilepsy and neurodevelopmental disorders. Functional effects of a …