The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes

ME Schranz, MA Lysak, T Mitchell-Olds - Trends in plant science, 2006 - cell.com
In this review we summarize recent advances in our understanding of phylogenetics,
polyploidization and comparative genomics in the family Brassicaceae. These findings pave …

Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits

JR Stinchcombe, HE Hoekstra - Heredity, 2008 - nature.com
A central challenge in evolutionary biology is to identify genes underlying ecologically
important traits and describe the fitness consequences of naturally occurring variation at …

Polyploidy and angiosperm diversification

DE Soltis, VA Albert, J Leebens‐Mack… - American journal of …, 2009 - Wiley Online Library
Polyploidy has long been recognized as a major force in angiosperm evolution. Recent
genomic investigations not only indicate that polyploidy is ubiquitous among angiosperms …

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

TT Hu, P Pattyn, EG Bakker, J Cao, JF Cheng… - Nature …, 2011 - nature.com
We report the 207-Mb genome sequence of the North American Arabidopsis lyrata strain
MN47 based on 8.3× dideoxy sequence coverage. We predict 32,670 genes in this …

Deciphering the Diploid Ancestral Genome of the Mesohexaploid Brassica rapa

F Cheng, T Mandáková, J Wu, Q Xie, MA Lysak… - The Plant …, 2013 - academic.oup.com
The genus Brassica includes several important agricultural and horticultural crops. Their
current genome structures were shaped by whole-genome triplication followed by extensive …

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

H Tang, X Wang, JE Bowers, R Ming, M Alam… - Genome …, 2008 - genome.cshlp.org
Large-scale (segmental or whole) genome duplication has been recurring in angiosperm
evolution. Subsequent gene loss and rearrangements further affect gene copy numbers and …

Chromosome triplication found across the tribe Brassiceae

MA Lysak, MA Koch, A Pecinka, I Schubert - Genome research, 2005 - genome.cshlp.org
We have used an∼ 8.7-Mb BAC contig of Arabidopsis thaliana Chromosome 4 to trace
homeologous chromosome regions in 21 species of the family Brassicaceae. Homeologs of …

Segmental Structure of the Brassica napus Genome Based on Comparative Analysis With Arabidopsis thaliana

IAP Parkin, SM Gulden, AG Sharpe, L Lukens… - Genetics, 2005 - academic.oup.com
Over 1000 genetically linked RFLP loci in Brassica napus were mapped to homologous
positions in the Arabidopsis genome on the basis of sequence similarity. Blocks of …

Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species

MA Lysak, A Berr, A Pecinka… - Proceedings of the …, 2006 - National Acad Sciences
Evolution of chromosome complements can be resolved by genome sequencing,
comparative genetic mapping, and comparative chromosome painting. Previously …

Spodoptera frugiperda (Lepidoptera: Noctuidae) host-plant variants: two host strains or two distinct species?

P Dumas, F Legeai, C Lemaitre, E Scaon, M Orsucci… - Genetica, 2015 - Springer
The moth Spodoptera frugiperda is a well-known pest of crops throughout the Americas,
which consists of two strains adapted to different host-plants: the first feeds preferentially on …