The progress of multi-omics technologies: determining function in lactic acid bacteria using a systems level approach

ST O'Donnell, RP Ross, C Stanton - Frontiers in microbiology, 2020 - frontiersin.org
Lactic Acid Bacteria (LAB) have long been recognized as having a significant impact
ranging from commercial to health domains. A vast amount of research has been carried out …

RNA splicing analysis in genomic medicine

H Wai, AGL Douglas, D Baralle - The international journal of biochemistry & …, 2019 - Elsevier
High-throughput next-generation sequencing technologies have led to a rapid increase in
the number of sequence variants identified in clinical practice via diagnostic genetic tests …

Multiple long-read sequencing survey of herpes simplex virus dynamic transcriptome

D Tombácz, N Moldován, Z Balázs, G Gulyás… - Frontiers in …, 2019 - frontiersin.org
Long-read sequencing (LRS) has become increasingly important in RNA research due to its
strength in resolving complex transcriptomic architectures. In this regard, currently two LRS …

Long-read assays shed new light on the transcriptome complexity of a viral pathogen

D Tombácz, I Prazsák, Z Csabai, N Moldován… - Scientific Reports, 2020 - nature.com
Abstract Characterization of global transcriptomes using conventional short-read
sequencing is challenging due to the insensitivity of these platforms to transcripts isoforms …

[Retracted] EST–SSR Marker Development and Full‐Length Transcriptome Sequence Analysis of Tiger Lily (Lilium lancifolium Thunb)

M Sun, Y Zhao, X Shao, J Ge, X Tang… - Applied Bionics and …, 2022 - Wiley Online Library
The fast advancement and deployment of sequencing technologies after the Human
Genome Project have greatly increased our knowledge of the eukaryotic genome …

Physiological roles of antisense RNAs in prokaryotes

M Lejars, A Kobayashi, E Hajnsdorf - Biochimie, 2019 - Elsevier
Prokaryotes encounter constant and often brutal modifications to their environment. In order
to survive, they need to maintain fitness, which includes adapting their protein expression …

Combined short and long-read sequencing reveals a complex transcriptomic architecture of African swine fever virus

G Torma, D Tombácz, Z Csabai, N Moldován… - Viruses, 2021 - mdpi.com
African swine fever virus (ASFV) is a large DNA virus belonging to the Asfarviridae family.
Despite its agricultural importance, little is known about the fundamental molecular …

[HTML][HTML] MinION nanopore sequencing and assembly of a complete human papillomavirus genome

RN Brancaccio, A Robitaille, S Dutta… - Journal of Virological …, 2021 - Elsevier
Abstract Background The MinION sequencer belongs to the third generation of sequencing
technology that allows for the generation of ultra-long reads, representing a potentially more …

Meta-analytic approach for transcriptome profiling of herpes simplex virus type 1

D Tombácz, G Torma, G Gulyás, N Moldován… - Scientific data, 2020 - nature.com
In this meta-analysis, we re-analysed and compared herpes simplex virus type 1
transcriptomic data generated by eight studies using various short-and long-read …

MinION sequencing to genotype US strains of infectious laryngotracheitis virus

SJ Spatz, M Garcia, S Riblet, TA Ross… - Avian …, 2019 - Taylor & Francis
Over the last decade the US broiler industry has fought long-lasting outbreaks of infectious
laryngotracheitis (ILTV). Previously, nine genotypes (I-IX) of ILTVs have been recognized …