Two decades of Martini: Better beads, broader scope
The Martini model, a coarse‐grained force field for molecular dynamics simulations, has
been around for nearly two decades. Originally developed for lipid‐based systems by the …
been around for nearly two decades. Originally developed for lipid‐based systems by the …
[HTML][HTML] Computational modeling of membrane trafficking processes: From large molecular assemblies to chemical specificity
In the last decade, molecular dynamics (MD) simulations have become an essential tool to
investigate the molecular properties of membrane trafficking processes, often in conjunction …
investigate the molecular properties of membrane trafficking processes, often in conjunction …
Myomerger promotes fusion pore by elastic coupling between proximal membrane leaflets and hemifusion diaphragm
G Golani, E Leikina, K Melikov, JM Whitlock… - Nature …, 2021 - nature.com
Myomerger is a muscle-specific membrane protein involved in formation of multinucleated
muscle cells by mediating the transition from the early hemifusion stage to complete fusion …
muscle cells by mediating the transition from the early hemifusion stage to complete fusion …
Should I stay or should I go? Golgi membrane spatial organization for protein sorting and retention
P Lujan, F Campelo - Archives of biochemistry and biophysics, 2021 - Elsevier
The Golgi complex is the membrane-bound organelle that lies at the center of the secretory
pathway. Its main functions are to maintain cellular lipid homeostasis, to orchestrate protein …
pathway. Its main functions are to maintain cellular lipid homeostasis, to orchestrate protein …
Molecular dynamics simulations of curved lipid membranes
AH Larsen - International Journal of Molecular Sciences, 2022 - mdpi.com
Eukaryotic cells contain membranes with various curvatures, from the near-plane plasma
membrane to the highly curved membranes of organelles, vesicles, and membrane …
membrane to the highly curved membranes of organelles, vesicles, and membrane …
Molecular dynamics of the viral life cycle: progress and prospects
Highlights•Molecular dynamics simulations are the central technique uniting the field of
computational virology.•Viruses responsible for recent epidemics and pandemics have been …
computational virology.•Viruses responsible for recent epidemics and pandemics have been …
The local variation of the Gaussian modulus enables different pathways for fluid lipid vesicle fusion
Viral infections, fertilization, neurotransmission, and many other fundamental biological
processes rely on membrane fusion. Straightforward calculations based on the celebrated …
processes rely on membrane fusion. Straightforward calculations based on the celebrated …
SARS-CoV-2 Binding to Terminal Sialic Acid of Gangliosides Embedded in Lipid Membranes
G Negi, A Sharma, M Chaudhary, D Gupta… - ACS Infectious …, 2023 - ACS Publications
Multiple recent reports indicate that the S protein of SARS-CoV-2 specifically interacts with
membrane receptors and attachment factors other than ACE2. They likely have an active …
membrane receptors and attachment factors other than ACE2. They likely have an active …
Ceramide-1-phosphate transfer protein enhances lipid transport by disrupting hydrophobic lipid–membrane contacts
JR Rogers, PL Geissler - PLOS Computational Biology, 2023 - journals.plos.org
Cellular distributions of the sphingolipid ceramide-1-phosphate (C1P) impact essential
biological processes. C1P levels are spatiotemporally regulated by ceramide-1-phosphate …
biological processes. C1P levels are spatiotemporally regulated by ceramide-1-phosphate …
Single-virus content-mixing assay reveals cholesterol-enhanced influenza membrane fusion efficiency
To infect a cell, enveloped viruses must first undergo membrane fusion, which proceeds
through a hemifusion intermediate, followed by the formation of a fusion pore through which …
through a hemifusion intermediate, followed by the formation of a fusion pore through which …