[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics

JA Blakeley-Ruiz, M Kleiner - Computational and structural biotechnology …, 2022 - Elsevier
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …

Omics-driven biotechnology for industrial applications

B Amer, EEK Baidoo - Frontiers in Bioengineering and Biotechnology, 2021 - frontiersin.org
Biomanufacturing is a key component of biotechnology that uses biological systems to
produce bioproducts of commercial relevance, which are of great interest to the energy …

Metaproteomics: much more than measuring gene expression in microbial communities

M Kleiner - Msystems, 2019 - Am Soc Microbiol
Metaproteomics is the large-scale identification and quantification of proteins from microbial
communities and thus provides direct insight into the phenotypes of microorganisms on the …

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

T Van Den Bossche, BJ Kunath, K Schallert… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …

Five key aspects of metaproteomics as a tool to understand functional interactions in host associated microbiomes

F Salvato, RL Hettich, M Kleiner - Advances in Clinical …, 2021 - taylorfrancis.com
Host-associated microbial communities (microbiomes) play critical roles in human, animal,
and plant health and development. Basic metaproteomes can provide diverse types of …

A shared core microbiome in soda lakes separated by large distances

JK Zorz, C Sharp, M Kleiner, PMK Gordon… - Nature …, 2019 - nature.com
In alkaline soda lakes, concentrated dissolved carbonates establish productive phototrophic
microbial mats. Here we show how microbial phototrophs and autotrophs contribute to this …

Metaproteomics insights into traditional fermented foods and beverages

L Yang, W Fan, Y Xu - … Reviews in Food Science and Food …, 2020 - Wiley Online Library
Traditional fermented foods and beverages (TFFB) are important dietary components. Multi‐
omics techniques have been applied to all aspects of TFFB research to clarify the …

A robust and universal metaproteomics workflow for research studies and routine diagnostics within 24 h using phenol extraction, FASP digest, and the …

R Heyer, K Schallert, A Büdel, R Zoun, S Dorl… - Frontiers in …, 2019 - frontiersin.org
The investigation of microbial proteins by mass spectrometry (metaproteomics) is a key
technology for simultaneously assessing the taxonomic composition and the functionality of …

New frontiers of anaerobic hydrocarbon biodegradation in the multi-omics era

K Laczi, Á Erdeiné Kis, Á Szilágyi… - Frontiers in …, 2020 - frontiersin.org
The accumulation of petroleum hydrocarbons in the environment substantially endangers
terrestrial and aquatic ecosystems. Many microbial strains have been recognized to utilize …

Two-dimensional high-performance liquid chromatography as a powerful tool for bioanalysis: The paradigm of antibiotics

C Papatheocharidou, V Samanidou - Molecules, 2023 - mdpi.com
The technique of two-dimensional high-performance liquid chromatography has managed to
gain the recognition it deserves thanks to the advantages of satisfactory separations it can …