[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics
JA Blakeley-Ruiz, M Kleiner - Computational and structural biotechnology …, 2022 - Elsevier
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …
interrogating the functions of specific organisms in microbial communities, in addition to total …
Omics-driven biotechnology for industrial applications
B Amer, EEK Baidoo - Frontiers in Bioengineering and Biotechnology, 2021 - frontiersin.org
Biomanufacturing is a key component of biotechnology that uses biological systems to
produce bioproducts of commercial relevance, which are of great interest to the energy …
produce bioproducts of commercial relevance, which are of great interest to the energy …
Metaproteomics: much more than measuring gene expression in microbial communities
M Kleiner - Msystems, 2019 - Am Soc Microbiol
Metaproteomics is the large-scale identification and quantification of proteins from microbial
communities and thus provides direct insight into the phenotypes of microorganisms on the …
communities and thus provides direct insight into the phenotypes of microorganisms on the …
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows
T Van Den Bossche, BJ Kunath, K Schallert… - Nature …, 2021 - nature.com
Metaproteomics has matured into a powerful tool to assess functional interactions in
microbial communities. While many metaproteomic workflows are available, the impact of …
microbial communities. While many metaproteomic workflows are available, the impact of …
Five key aspects of metaproteomics as a tool to understand functional interactions in host associated microbiomes
F Salvato, RL Hettich, M Kleiner - Advances in Clinical …, 2021 - taylorfrancis.com
Host-associated microbial communities (microbiomes) play critical roles in human, animal,
and plant health and development. Basic metaproteomes can provide diverse types of …
and plant health and development. Basic metaproteomes can provide diverse types of …
A shared core microbiome in soda lakes separated by large distances
In alkaline soda lakes, concentrated dissolved carbonates establish productive phototrophic
microbial mats. Here we show how microbial phototrophs and autotrophs contribute to this …
microbial mats. Here we show how microbial phototrophs and autotrophs contribute to this …
Metaproteomics insights into traditional fermented foods and beverages
L Yang, W Fan, Y Xu - … Reviews in Food Science and Food …, 2020 - Wiley Online Library
Traditional fermented foods and beverages (TFFB) are important dietary components. Multi‐
omics techniques have been applied to all aspects of TFFB research to clarify the …
omics techniques have been applied to all aspects of TFFB research to clarify the …
A robust and universal metaproteomics workflow for research studies and routine diagnostics within 24 h using phenol extraction, FASP digest, and the …
The investigation of microbial proteins by mass spectrometry (metaproteomics) is a key
technology for simultaneously assessing the taxonomic composition and the functionality of …
technology for simultaneously assessing the taxonomic composition and the functionality of …
New frontiers of anaerobic hydrocarbon biodegradation in the multi-omics era
K Laczi, Á Erdeiné Kis, Á Szilágyi… - Frontiers in …, 2020 - frontiersin.org
The accumulation of petroleum hydrocarbons in the environment substantially endangers
terrestrial and aquatic ecosystems. Many microbial strains have been recognized to utilize …
terrestrial and aquatic ecosystems. Many microbial strains have been recognized to utilize …
Two-dimensional high-performance liquid chromatography as a powerful tool for bioanalysis: The paradigm of antibiotics
C Papatheocharidou, V Samanidou - Molecules, 2023 - mdpi.com
The technique of two-dimensional high-performance liquid chromatography has managed to
gain the recognition it deserves thanks to the advantages of satisfactory separations it can …
gain the recognition it deserves thanks to the advantages of satisfactory separations it can …