Application of machine learning in microbiology

K Qu, F Guo, X Liu, Y Lin, Q Zou - Frontiers in microbiology, 2019 - frontiersin.org
Microorganisms are ubiquitous and closely related to people's daily lives. Since they were
first discovered in the 19th century, researchers have shown great interest in …

Positive-unlabeled learning in bioinformatics and computational biology: a brief review

F Li, S Dong, A Leier, M Han, X Guo, J Xu… - Briefings in …, 2022 - academic.oup.com
Conventional supervised binary classification algorithms have been widely applied to
address significant research questions using biological and biomedical data. This …

BioSeq-Analysis2. 0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning …

B Liu, X Gao, H Zhang - Nucleic acids research, 2019 - academic.oup.com
As the first web server to analyze various biological sequences at sequence level based on
machine learning approaches, many powerful predictors in the field of computational …

BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches

B Liu - Briefings in bioinformatics, 2019 - academic.oup.com
With the avalanche of biological sequences generated in the post-genomic age, one of the
most challenging problems is how to computationally analyze their structures and functions …

IDP-Seq2Seq: identification of intrinsically disordered regions based on sequence to sequence learning

YJ Tang, YH Pang, B Liu - Bioinformatics, 2020 - academic.oup.com
Motivation Related to many important biological functions, intrinsically disordered regions
(IDRs) are widely distributed in proteins. Accurate prediction of IDRs is critical for the protein …

BioSeq-Diabolo: biological sequence similarity analysis using Diabolo

H Li, B Liu - PLoS computational biology, 2023 - journals.plos.org
As the key for biological sequence structure and function prediction, disease diagnosis and
treatment, biological sequence similarity analysis has attracted more and more attentions …

DeepSVM-fold: protein fold recognition by combining support vector machines and pairwise sequence similarity scores generated by deep learning networks

B Liu, CC Li, K Yan - Briefings in bioinformatics, 2020 - academic.oup.com
Protein fold recognition is critical for studying the structures and functions of proteins. The
existing protein fold recognition approaches failed to efficiently calculate the pairwise …

Best match: new relevance search for PubMed

N Fiorini, K Canese, G Starchenko, E Kireev, W Kim… - PLoS …, 2018 - journals.plos.org
PubMed is a free search engine for biomedical literature accessed by millions of users from
around the world each day. With the rapid growth of biomedical literature—about two articles …

NerLTR-DTA: drug–target binding affinity prediction based on neighbor relationship and learning to rank

X Ru, X Ye, T Sakurai, Q Zou - Bioinformatics, 2022 - academic.oup.com
Motivation Drug–target interaction prediction plays an important role in new drug discovery
and drug repurposing. Binding affinity indicates the strength of drug–target interactions …

A brief survey of machine learning methods in protein sub-Golgi localization

W Yang, XJ Zhu, J Huang, H Ding… - Current …, 2019 - ingentaconnect.com
Background: The location of proteins in a cell can provide important clues to their functions
in various biological processes. Thus, the application of machine learning method in the …