Metal ion modeling using classical mechanics

P Li, KM Merz Jr - Chemical reviews, 2017 - ACS Publications
Metal ions play significant roles in numerous fields including chemistry, geochemistry,
biochemistry, and materials science. With computational tools increasingly becoming …

Molecular modeling insights into the structure and behavior of integrins: A review

I Tvaroška, S Kozmon, J Kóňa - Cells, 2023 - mdpi.com
Integrins are heterodimeric glycoproteins crucial to the physiology and pathology of many
biological functions. As adhesion molecules, they mediate immune cell trafficking, migration …

The ReaxFF reactive force-field: development, applications and future directions

TP Senftle, S Hong, MM Islam, SB Kylasa… - npj Computational …, 2016 - nature.com
The reactive force-field (ReaxFF) interatomic potential is a powerful computational tool for
exploring, developing and optimizing material properties. Methods based on the principles …

Atomic-scale insight into the pyrolysis of polycarbonate by ReaxFF-based reactive molecular dynamics simulation

Q Liu, S Liu, Y Lv, P Hu, Y Huang, M Kong, G Li - Fuel, 2021 - Elsevier
The isothermal pyrolysis behavior of bisphenol-A polycarbonate under anoxic conditions at
different temperatures was studied by using molecular dynamics simulations with a reactive …

Recent advances for improving the accuracy, transferability, and efficiency of reactive force fields

I Leven, H Hao, S Tan, X Guan, KA Penrod… - Journal of chemical …, 2021 - ACS Publications
Reactive force fields provide an affordable model for simulating chemical reactions at a
fraction of the cost of quantum mechanical approaches. However, classically accounting for …

QM/Classical modeling of surface enhanced Raman scattering based on atomistic electromagnetic models

P Lafiosca, L Nicoli, L Bonatti… - Journal of Chemical …, 2023 - ACS Publications
We present quantum mechanics (QM)/frequency dependent fluctuating charge (QM/ωFQ)
and fluctuating dipoles (QM/ωFQFμ) multiscale approaches to model surface-enhanced …

Improvement of the ReaxFF description for functionalized hydrocarbon/water weak interactions in the condensed phase

W Zhang, ACT Van Duin - The Journal of Physical Chemistry B, 2018 - ACS Publications
The ReaxFF protein reactive force field (protein-2013) has been successfully employed to
simulate the biomolecules and membrane fuel cells, but it inaccurately describes the weak …

Interaction mechanism of supercritical CO2 with shales and a new quantitative storage capacity evaluation method

X Dai, C Wei, M Wang, R Ma, Y Song, J Zhang, X Wang… - Energy, 2023 - Elsevier
Geochemical interactions between shale and supercritical carbon dioxide (scCO 2) may
dominate CO 2 storage in shale gas reservoirs by changing the brine chemistry and rock …

Development, applications and challenges of ReaxFF reactive force field in molecular simulations

Y Han, D Jiang, J Zhang, W Li, Z Gan, J Gu - Frontiers of Chemical …, 2016 - Springer
As an advanced and new technology in molecular simulation fields, ReaxFF reactive force
field has been developed and widely applied during the last two decades. ReaxFF bridges …

Characterising flame-retardant mechanism of phosphorous-containing intumescent coating on polyethylene via ReaxFF MD simulations

IMDC Cordeiro, TBY Chen, ACY Yuen, Q Chen… - Chemical Engineering …, 2024 - Elsevier
Localised flame-retardant (FR) chemistry of polymer composites is complex, versatile and
microscopic depending on the combination of polymer matrix and various FR systems …