Epigenetics of atherosclerosis: emerging mechanisms and methods
Atherosclerosis is a vascular pathology characterized by inflammation and plaque build-up
within arterial vessel walls. Vessel occlusion, often occurring after plaque rupture, can result …
within arterial vessel walls. Vessel occlusion, often occurring after plaque rupture, can result …
Spatial-CUT&Tag: spatially resolved chromatin modification profiling at the cellular level
Spatial omics emerged as a new frontier of biological and biomedical research. Here, we
present spatial-CUT&Tag for spatially resolved genome-wide profiling of histone …
present spatial-CUT&Tag for spatially resolved genome-wide profiling of histone …
Detect accessible chromatin using ATAC-sequencing, from principle to applications
Y Sun, N Miao, T Sun - Hereditas, 2019 - Springer
Background Chromatin accessibility is crucial for gene expression regulation in specific cells
and in multiple biological processes. Assay for Transposase Accessible Chromatin with high …
and in multiple biological processes. Assay for Transposase Accessible Chromatin with high …
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Background ATAC-seq (Assays for Transposase-Accessible Chromatin using sequencing)
is a recently developed technique for genome-wide analysis of chromatin accessibility …
is a recently developed technique for genome-wide analysis of chromatin accessibility …
Single-cell transcriptome conservation in cryopreserved cells and tissues
A Guillaumet-Adkins, G Rodríguez-Esteban, E Mereu… - Genome biology, 2017 - Springer
A variety of single-cell RNA preparation procedures have been described. So far, protocols
require fresh material, which hinders complex study designs. We describe a sample …
require fresh material, which hinders complex study designs. We describe a sample …
Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
S Ma, Y Zhang - Molecular biomedicine, 2020 - Springer
Chromatin regulatory landscape plays a critical role in many disease processes and embryo
development. Epigenome sequencing technologies such as chromatin immunoprecipitation …
development. Epigenome sequencing technologies such as chromatin immunoprecipitation …
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
EG Baxi, T Thompson, J Li, JA Kaye, RG Lim… - Nature …, 2022 - nature.com
Answer ALS is a biological and clinical resource of patient-derived, induced pluripotent stem
(iPS) cell lines, multi-omic data derived from iPS neurons and longitudinal clinical and …
(iPS) cell lines, multi-omic data derived from iPS neurons and longitudinal clinical and …
Genome-wide epigenomic profiling for biomarker discovery
RAM Dirks, HG Stunnenberg, H Marks - Clinical epigenetics, 2016 - Springer
A myriad of diseases is caused or characterized by alteration of epigenetic patterns,
including changes in DNA methylation, post-translational histone modifications, or chromatin …
including changes in DNA methylation, post-translational histone modifications, or chromatin …
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients
Neurodegenerative diseases are challenging for systems biology because of the lack of
reliable animal models or patient samples at early disease stages. Induced pluripotent stem …
reliable animal models or patient samples at early disease stages. Induced pluripotent stem …
An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice
JPL Castro, MN Yancoskie, M Marchini, S Belohlavy… - elife, 2019 - elifesciences.org
Evolutionary studies are often limited by missing data that are critical to understanding the
history of selection. Selection experiments, which reproduce rapid evolution under …
history of selection. Selection experiments, which reproduce rapid evolution under …