Best practices on the differential expression analysis of multi-species RNA-seq
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially
expressed genes from multiple species originating from a single RNA sample, termed dual …
expressed genes from multiple species originating from a single RNA sample, termed dual …
Understanding Mucormycoses in the Age of “omics”
AY Soare, TN Watkins, VM Bruno - Frontiers in Genetics, 2020 - frontiersin.org
Mucormycoses are deadly invasive infections caused by several fungal species belonging
to the subphylum Mucoromycotina, order Mucorales. Hallmarks of disease progression …
to the subphylum Mucoromycotina, order Mucorales. Hallmarks of disease progression …
Recent Advances and Future Perspectives in Mitigating Invasive Antifungal-Resistant Pathogen Aspergillus fumigatus in Africa
Abstract Purpose of Review Azole resistance in Aspergillus fumigatus is an emerging public
health issue with global distribution and has been linked to use in agricultural and …
health issue with global distribution and has been linked to use in agricultural and …
Nitrite induced transcription of p450nor during denitrification by Fusarium oxysporum correlates with the production of N2O with a high 15N site preference
The greenhouse gas nitrous oxide (N 2 O) is produced in soil as a consequence of complex
co-occurring processes conducted by diverse microbial species, including fungi. The fungal …
co-occurring processes conducted by diverse microbial species, including fungi. The fungal …
Epidermal growth factor receptor signaling governs the host inflammatory response to invasive aspergillosis
The epidermal growth factor receptor (EGFR) has been identified as an epithelial cell
receptor for Mucorales fungi and Candida albicans. Blocking EGFR with small molecule …
receptor for Mucorales fungi and Candida albicans. Blocking EGFR with small molecule …
Multiplexed target enrichment of coding and non-coding transcriptomes enables studying Candida spp. infections from human derived samples
H Hovhannisyan, A Rodríguez, E Saus… - Frontiers in Cellular …, 2023 - frontiersin.org
The study of transcriptomic interactions between host and pathogens in in vivo conditions is
challenged by the low relative amounts of the pathogen RNA. Yeast opportunistic pathogens …
challenged by the low relative amounts of the pathogen RNA. Yeast opportunistic pathogens …
Assessing myBaits Target Capture Sequencing Methodology Using Short-Read Sequencing for Variant Detection in Oat Genomics and Breeding
The integration of target capture systems with next-generation sequencing has emerged as
an efficient tool for exploring specific genetic regions with a high resolution and facilitating …
an efficient tool for exploring specific genetic regions with a high resolution and facilitating …
Using in vivo transcriptomics and RNA enrichment to identify genes involved in virulence of Candida glabrata
S Schrevens, E Durandau, VDT Tran, D Sanglard - Virulence, 2022 - Taylor & Francis
Candida species are the most commonly isolated opportunistic fungal pathogens in
humans. Candida albicans causes most of the diagnosed infections, closely followed by …
humans. Candida albicans causes most of the diagnosed infections, closely followed by …
Common analysis of direct RNA sequencinG CUrrently leads to misidentification of m5C at GCU motifs
KJ Watson, RE Bromley, BC Sparklin… - Life science …, 2024 - life-science-alliance.org
RNA modifications, such as methylation, can be detected with Oxford Nanopore
Technologies direct RNA sequencing. One commonly used tool for detecting 5 …
Technologies direct RNA sequencing. One commonly used tool for detecting 5 …
Multispecies Transcriptomics Data Set of Brugia malayi, Its Wolbachia Endosymbiont wBm, and Aedes aegypti across the B. malayi Life Cycle
Here, we present a comprehensive transcriptomics data set of Brugia malayi, its Wolbachia
endosymbiont w Bm, and its vector host. This study samples from 16 stages across the entire …
endosymbiont w Bm, and its vector host. This study samples from 16 stages across the entire …