Competing Intramolecular vs. Intermolecular Hydrogen Bonds in Solution

PI Nagy - International journal of molecular sciences, 2014 - mdpi.com
A hydrogen bond for a local-minimum-energy structure can be identified according to the
definition of the International Union of Pure and Applied Chemistry (IUPAC recommendation …

Molecular simulation for food protein–ligand interactions: A comprehensive review on principles, current applications, and emerging trends

Z Jin, Z Wei - Comprehensive Reviews in Food Science and …, 2024 - Wiley Online Library
In recent years, investigations on molecular interaction mechanisms between food proteins
and ligands have attracted much interest. The interaction mechanisms can supply much …

Assessing the performance of MM/PBSA and MM/GBSA methods. 5. Improved docking performance using high solute dielectric constant MM/GBSA and MM/PBSA …

H Sun, Y Li, M Shen, S Tian, L Xu, P Pan… - Physical Chemistry …, 2014 - pubs.rsc.org
With the rapid development of computational techniques and hardware, more rigorous and
precise theoretical models have been used to predict the binding affinities of a large number …

DNA double helix, a tiny electromotor

C Maffeo, L Quednau, J Wilson… - Nature Nanotechnology, 2023 - nature.com
Flowing fluid past chiral objects has been used for centuries to power rotary motion in man-
made machines. By contrast, rotary motion in nanoscale biological or chemical systems is …

Trisaccharide containing α2, 3-linked sialic acid is a receptor for mumps virus

M Kubota, K Takeuchi, S Watanabe… - Proceedings of the …, 2016 - National Acad Sciences
Mumps virus (MuV) remains an important pathogen worldwide, causing epidemic parotitis,
orchitis, meningitis, and encephalitis. Here we show that MuV preferentially uses a …

Molecular dynamics simulation techniques and their application to aroma compounds/cyclodextrin inclusion complexes: A review

X Kou, D Su, F Pan, X Xu, Q Meng, Q Ke - Carbohydrate Polymers, 2023 - Elsevier
Homeostatic technologies play a crucial role in maintaining the quality and extending the
service life of aroma compounds (ACs). Commercial cyclodextrins (CDs) are commonly …

APP substrate ectodomain defines amyloid‐β peptide length by restraining γ‐secretase processivity and facilitating product release

M Koch, T Enzlein, SY Chen, D Petit, S Lismont… - The EMBO …, 2023 - embopress.org
Sequential proteolysis of the amyloid precursor protein (APP) by γ‐secretases generates
amyloid‐β (Aβ) peptides and defines the proportion of short‐to‐long Aβ peptides, which is …

Active-site conformational fluctuations promote the enzymatic activity of NDM-1

H Zhang, G Ma, Y Zhu, L Zeng, A Ahmad… - Antimicrobial agents …, 2018 - Am Soc Microbiol
ABSTRACT β-Lactam antibiotics are the mainstay for the treatment of bacterial infections.
However, elevated resistance to these antibiotics mediated by metallo-β-lactamases (MBLs) …

Evaluation of the potency of FDA-approved drugs on wild type and mutant SARS-CoV-2 helicase (Nsp13)

OM Ugurel, O Mutlu, E Sariyer, S Kocer… - International Journal of …, 2020 - Elsevier
SARS-CoV-2 has caused COVID-19 outbreak with nearly 2 M infected people and over
100K death worldwide, until middle of April 2020. There is no confirmed drug for the …

[HTML][HTML] Discovery of novel inhibitors from medicinal plants for v-domain ig suppressor of t-cell activation

I Muneer, S Ahmad, A Naz, SW Abbasi… - Frontiers in Molecular …, 2021 - frontiersin.org
V-domain Ig suppressor of T cell activation (VISTA) is an immune checkpoint and is a type I
transmembrane protein. VISTA is linked to immunotherapy resistance and it is a potential …