Charting plant gene functions in the multi-omics and single-cell era

T Depuydt, B De Rybel, K Vandepoele - Trends in Plant Science, 2023 - cell.com
Despite the increased access to high-quality plant genome sequences, the set of genes with
a known function remains far from complete. With the advent of novel bulk and single-cell …

Spatial transcriptomics drives a new era in plant research

R Yin, K Xia, X Xu - The Plant Journal, 2023 - Wiley Online Library
Spatial transcriptomics drives a new era in plant research - Yin - 2023 - The Plant Journal - Wiley
Online Library Skip to Article Content Skip to Article Information Wiley Online Library Wiley …

Multiplexed single-cell 3D spatial gene expression analysis in plant tissue using PHYTOMap

T Nobori, M Oliva, R Lister, JR Ecker - Nature Plants, 2023 - nature.com
Retrieving the complex responses of individual cells in the native three-dimensional tissue
context is crucial for a complete understanding of tissue functions. Here, we present …

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

C Grones, T Eekhout, D Shi, M Neumann… - The Plant …, 2024 - academic.oup.com
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of
plant genes at an unprecedented resolution. Therefore, these technologies are gaining …

Cultivating potential: harnessing plant stem cells for agricultural crop improvement

P Lindsay, KW Swentowsky, D Jackson - Molecular Plant, 2024 - cell.com
Meristems are stem cell-containing structures that produce all plant organs and are therefore
important targets for crop improvement. Developmental regulators control the balance and …

Resolving plant development in space and time with single-cell genomics

TM Nolan, R Shahan - Current opinion in plant biology, 2023 - Elsevier
Single-cell genomics technologies are ushering in a new research era. In this review, we
summarize the benefits and current challenges of using these technologies to probe the …

Hormonal control of medial–lateral growth and vein formation in the maize leaf

JM Robil, P McSteen - New Phytologist, 2023 - Wiley Online Library
Parallel veins are characteristic of monocots, including grasses (Poaceae). Therefore, how
parallel veins develop as the leaf grows in the medial–lateral (ML) dimension is a key …

Multiplexed in situ hybridization reveals distinct lineage identities for major and minor vein initiation during maize leaf development

C Perico, M Zaidem, O Sedelnikova… - Proceedings of the …, 2024 - pnas.org
Leaves of flowering plants are characterized by diverse venation patterns. Patterning begins
with the selection of vein-forming procambial initial cells from within the ground meristem of …

Spatial transcriptomics of a lycophyte root sheds light on root evolution

X Yang, W Poelmans, C Grones, A Lakehal… - Current Biology, 2023 - cell.com
Plant roots originated independently in lycophytes and euphyllophytes, whereas early
vascular plants were rootless. The organization of the root apical meristem in …

Use of GRF‐GIF chimeras and a ternary vector system to improve maize (Zea mays L.) transformation frequency

W Vandeputte, G Coussens, S Aesaert… - The Plant …, 2024 - Wiley Online Library
Maize (Zea mays L.) is an important crop that has been widely studied for its agronomic and
industrial applications and is one of the main classical model organisms for genetic …