Understanding nanocellulose–water interactions: Turning a detriment into an asset
Modern technology has enabled the isolation of nanocellulose from plant-based fibers, and
the current trend focuses on utilizing nanocellulose in a broad range of sustainable …
the current trend focuses on utilizing nanocellulose in a broad range of sustainable …
Electron-correlated fragment-molecular-orbital calculations for biomolecular and nano systems
Recent developments in the fragment molecular orbital (FMO) method for theoretical
formulation, implementation, and application to nano and biomolecular systems are …
formulation, implementation, and application to nano and biomolecular systems are …
The fragment molecular orbital method: theoretical development, implementation in GAMESS, and applications
DG Fedorov - Wiley Interdisciplinary Reviews: Computational …, 2017 - Wiley Online Library
The physical picture of the fragment molecular orbital (FMO) method is described on the
basis of a many‐body expansion with terms describing the polarization of isolated …
basis of a many‐body expansion with terms describing the polarization of isolated …
Hydrogen bonds and twist in cellulose microfibrils
There is increasing experimental and computational evidence that cellulose microfibrils can
exist in a stable twisted form. In this study, atomistic molecular dynamics (MD) simulations …
exist in a stable twisted form. In this study, atomistic molecular dynamics (MD) simulations …
Three-dimensional structures of carbohydrates and where to find them
SI Scherbinina, PV Toukach - International journal of molecular sciences, 2020 - mdpi.com
Analysis and systematization of accumulated data on carbohydrate structural diversity is a
subject of great interest for structural glycobiology. Despite being a challenging task …
subject of great interest for structural glycobiology. Despite being a challenging task …
The molecular origins of twist in cellulose I-beta
The observation of twisted microfibrils in cellulose Iβ both in imaging and in molecular
simulations has been reported and studied for years. This article reports a computational …
simulations has been reported and studied for years. This article reports a computational …
Subsystem analysis for the fragment molecular orbital method and its application to protein–ligand binding in solution
DG Fedorov, K Kitaura - The Journal of Physical Chemistry A, 2016 - ACS Publications
A subsystem analysis is derived incorporating interfragment interactions into the fragment
properties, such as energies or charges. The relative stabilities of three alanine isomers, the …
properties, such as energies or charges. The relative stabilities of three alanine isomers, the …
Hybrid MPI-OpenMP parallelism in the ONETEP linear-scaling electronic structure code: Application to the delamination of cellulose nanofibrils
KA Wilkinson, NDM Hine… - Journal of chemical theory …, 2014 - ACS Publications
We present a hybrid MPI-OpenMP implementation of Linear-Scaling Density Functional
Theory within the ONETEP code. We illustrate its performance on a range of high …
Theory within the ONETEP code. We illustrate its performance on a range of high …
A comprehensive analysis in terms of molecule-intrinsic quasi-atomic orbitals. IV. Bond breaking and bond forming along the dissociative reaction path of dioxetane
AC West, MW Schmidt, MS Gordon… - The Journal of …, 2015 - ACS Publications
The quantitative analysis of molecular density matrices in terms of oriented quasi-atomic
orbitals (QUAOs) is shown to yield detailed conceptual insight into the dissociation of …
orbitals (QUAOs) is shown to yield detailed conceptual insight into the dissociation of …
Third-order density-functional tight-binding combined with the fragment molecular orbital method
Y Nishimoto, DG Fedorov, S Irle - Chemical Physics Letters, 2015 - Elsevier
We developed the energy and its analytic gradient for the self-consistent-charge density-
functional tight-binding method with the third-order expansion (DFTB3) combined with the …
functional tight-binding method with the third-order expansion (DFTB3) combined with the …