Towards reproducible computational drug discovery
The reproducibility of experiments has been a long standing impediment for further scientific
progress. Computational methods have been instrumental in drug discovery efforts owing to …
progress. Computational methods have been instrumental in drug discovery efforts owing to …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Recommendations on e-infrastructures for next-generation sequencing
With ever-increasing amounts of data being produced by next-generation sequencing (NGS)
experiments, the requirements placed on supporting e-infrastructures have grown. In this …
experiments, the requirements placed on supporting e-infrastructures have grown. In this …
A framework for scientific workflow reproducibility in the cloud
Workflow is a well-established means by which to capture scientific methods in an abstract
graph of interrelated processing tasks. The reproducibility of scientific workflows is therefore …
graph of interrelated processing tasks. The reproducibility of scientific workflows is therefore …
Open distribution of virtual containers as a key framework for open educational resources and STEAM subjects
This paper presents how virtual containers enhance the implementation of STEAM (science,
technology, engineering, arts, and math) subjects as Open Educational Resources (OER) …
technology, engineering, arts, and math) subjects as Open Educational Resources (OER) …
Expanding horizons in open and distance learning
This issue of the journal is devoted to a selection of papers to the ODLAA conference held in
Melbourne, Australia in Febraury 2017. In order to analyse the content of the presentations …
Melbourne, Australia in Febraury 2017. In order to analyse the content of the presentations …
OERaaS: Open educational resources as a service with the help of virtual containers
The new and challenging virtual containers are wide spread in a variety of sectors like
systems administration, application deployment and service provision. However, these tools …
systems administration, application deployment and service provision. However, these tools …
Sharing and performance optimization of reproducible workflows in the cloud
Scientific workflows play a vital role in modern science as they enable scientists to specify,
share and reuse computational experiments. To maximizethe benefits, workflows need to …
share and reuse computational experiments. To maximizethe benefits, workflows need to …
Interdisciplinary and transferable concepts in bioinformatics education: observations and approaches from a UK MSc course
IG Johnston, M Slater, JB Cazier - Frontiers in Education, 2022 - frontiersin.org
Bioinformatics is a highly interdisciplinary subject, with substantial and growing influence in
health, environmental science and society, and is utilised by scientists from many diverse …
health, environmental science and society, and is utilised by scientists from many diverse …
Approaches for containerized scientific workflows in cloud environments with applications in life science
O Spjuth, M Capuccini, M Carone, A Larsson, W Schaal… - 2020 - preprints.org
Containers are gaining popularity in life science research as they provide a solution for
encompassing dependencies of provisioned tools, simplify software installations for end …
encompassing dependencies of provisioned tools, simplify software installations for end …