Loop dynamics and the evolution of enzyme activity

M Corbella, GP Pinto, SCL Kamerlin - Nature Reviews Chemistry, 2023 - nature.com
In the early 2000s, Tawfik presented his 'New View'on enzyme evolution, highlighting the
role of conformational plasticity in expanding the functional diversity of limited repertoires of …

NMR characterization of the dynamics of biomacromolecules

AG Palmer III - Chemical reviews, 2004 - ACS Publications
Function in biological systems is exquisitely dependent on spatial and temporal changes in
biomacromolecules. Innumerable biological processes ultimately rely on transduction of …

Intrinsic dynamics of an enzyme underlies catalysis

EZ Eisenmesser, O Millet, W Labeikovsky… - Nature, 2005 - nature.com
A unique feature of chemical catalysis mediated by enzymes is that the catalytically reactive
atoms are embedded within a folded protein. Although current understanding of enzyme …

Enzyme dynamics during catalysis

EZ Eisenmesser, DA Bosco, M Akke, D Kern - Science, 2002 - science.org
Internal protein dynamics are intimately connected to enzymatic catalysis. However, enzyme
motions linked to substrate turnover remain largely unknown. We have studied dynamics of …

[HTML][HTML] Gates of enzymes

A Gora, J Brezovsky, J Damborsky - Chemical reviews, 2013 - ACS Publications
Enzymes are very efficient catalysts that are essential for the functioning of living organisms.
The low efficiency of biocatalysts produced de novo relative to those that have evolved …

An NMR perspective on enzyme dynamics

DD Boehr, HJ Dyson, PE Wright - Chemical reviews, 2006 - ACS Publications
Enzyme catalysis is an inherently dynamic process. Binding and release of ligands is often
accompanied by conformational changes, both subtle and dramatic (reviewed more …

Ab initio quantum chemical and mixed quantum mechanics/molecular mechanics (QM/MM) methods for studying enzymatic catalysis

RA Friesner, V Guallar - Annu. Rev. Phys. Chem., 2005 - annualreviews.org
▪ Abstract We describe large scale ab initio quantum chemical and mixed quantum
mechanics/molecular mechanics (QM/MM) methods for studying enzymatic reactions. First …

Linkage between dynamics and catalysis in a thermophilic-mesophilic enzyme pair

M Wolf-Watz, V Thai, K Henzler-Wildman… - Nature structural & …, 2004 - nature.com
A fundamental question is how enzymes can accelerate chemical reactions. Catalysis is not
only defined by actual chemical steps, but also by enzyme structure and dynamics. To …

Current applications of 19F NMR to studies of protein structure and dynamics

JL Kitevski-LeBlanc, RS Prosser - Progress in nuclear magnetic resonance …, 2012 - Elsevier
While traditional 1H, 13C, and 15N (HCN) solution state NMR protocols provide a wealth of
data on protein structure and dynamics, 19F NMR provides a unique perspective of …

A new spin on protein dynamics

L Columbus, WL Hubbell - Trends in biochemical sciences, 2002 - cell.com
Site-directed spin labeling is a general method for investigating structure and conformational
switching in soluble and membrane proteins. It will also be an important tool for exploring …