RNA modifications in physiology and disease: towards clinical applications

S Delaunay, M Helm, M Frye - Nature Reviews Genetics, 2024 - nature.com
The ability of chemical modifications of single nucleotides to alter the electrostatic charge,
hydrophobic surface and base pairing of RNA molecules is exploited for the clinical use of …

[HTML][HTML] Regulation of adult stem cell quiescence and its functions in the maintenance of tissue integrity

A de Morree, TA Rando - Nature Reviews Molecular Cell Biology, 2023 - nature.com
Adult stem cells are important for mammalian tissues, where they act as a cell reserve that
supports normal tissue turnover and can mount a regenerative response following acute …

[HTML][HTML] A transcription factor atlas of directed differentiation

J Joung, S Ma, T Tay, KR Geiger-Schuller… - Cell, 2023 - cell.com
Transcription factors (TFs) regulate gene programs, thereby controlling diverse cellular
processes and cell states. To comprehensively understand TFs and the programs they …

[HTML][HTML] Single-cell transcriptomic profiling of the aging mouse brain

M Ximerakis, SL Lipnick, BT Innes, SK Simmons… - Nature …, 2019 - nature.com
The mammalian brain is complex, with multiple cell types performing a variety of diverse
functions, but exactly how each cell type is affected in aging remains largely unknown. Here …

RNA modifications modulate gene expression during development

M Frye, BT Harada, M Behm, C He - Science, 2018 - science.org
RNA modifications have recently emerged as critical posttranscriptional regulators of gene
expression programs. They affect diverse eukaryotic biological processes, and the correct …

[HTML][HTML] Formation and integration of new neurons in the adult hippocampus

A Denoth-Lippuner, S Jessberger - Nature Reviews Neuroscience, 2021 - nature.com
Neural stem cells (NSCs) generate new neurons throughout life in the mammalian brain.
Adult-born neurons shape brain function, and endogenous NSCs could potentially be …

[HTML][HTML] Single-cell analysis reveals T cell infiltration in old neurogenic niches

BW Dulken, MT Buckley, P Navarro Negredo… - Nature, 2019 - nature.com
The mammalian brain contains neurogenic niches that comprise neural stem cells and other
cell types. Neurogenic niches become less functional with age, but how they change during …

Toward minimal residual disease-directed therapy in melanoma

F Rambow, A Rogiers, O Marin-Bejar, S Aibar, J Femel… - Cell, 2018 - cell.com
Many patients with advanced cancers achieve dramatic responses to a panoply of
therapeutics yet retain minimal residual disease (MRD), which ultimately results in relapse …

Cellular mechanisms and regulation of quiescence

O Marescal, IM Cheeseman - Developmental cell, 2020 - cell.com
Quiescence is a state of reversible proliferative arrest in which cells are not actively dividing
and yet retain the capacity to reenter the cell cycle upon receiving an appropriate stimulus …

[HTML][HTML] Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression

SJ Wu, SN Furlan, AB Mihalas, HS Kaya-Okur… - Nature …, 2021 - nature.com
Methods for quantifying gene expression and chromatin accessibility in single cells are well
established, but single-cell analysis of chromatin regions with specific histone modifications …