A practical guide to pseudo-marginal methods for computational inference in systems biology

DJ Warne, RE Baker, MJ Simpson - Journal of theoretical biology, 2020 - Elsevier
For many stochastic models of interest in systems biology, such as those describing
biochemical reaction networks, exact quantification of parameter uncertainty through …

A multifidelity ensemble Kalman filter with reduced order control variates

AA Popov, C Mou, A Sandu, T Iliescu - SIAM Journal on Scientific Computing, 2021 - SIAM
This work develops a new multifidelity ensemble Kalman filter (MFEnKF) algorithm based on
a linear control variate framework. The approach allows for rigorous multifidelity extensions …

Multilevel ensemble Kalman filtering

H Hoel, KJH Law, R Tempone - SIAM Journal on Numerical Analysis, 2016 - SIAM
This work embeds a multilevel Monte Carlo sampling strategy into the Monte Carlo step of
the ensemble Kalman filter (EnKF) in the setting of finite dimensional signal evolution and …

Multilevel particle filters

A Jasra, K Kamatani, KJH Law, Y Zhou - SIAM Journal on Numerical Analysis, 2017 - SIAM
In this paper the filtering of partially observed diffusions, with discrete-time observations, is
considered. It is assumed that only biased approximations of the diffusion can be obtained …

Advanced multilevel monte carlo methods

A Jasra, K Law, C Suciu - International Statistical Review, 2020 - Wiley Online Library
This article reviews the application of some advanced Monte Carlo techniques in the context
of multilevel Monte Carlo (MLMC). MLMC is a strategy employed to compute expectations …

Multilevel markov chain monte carlo

TJ Dodwell, C Ketelsen, R Scheichl, AL Teckentrup - Siam Review, 2019 - SIAM
In this paper we address the problem of the prohibitively large computational cost of existing
Markov chain Monte Carlo methods for large-scale applications with high-dimensional …

Multilevel sequential Monte Carlo with dimension-independent likelihood-informed proposals

A Beskos, A Jasra, K Law, Y Marzouk, Y Zhou - SIAM/ASA Journal on …, 2018 - SIAM
In this article we develop a new sequential Monte Carlo method for multilevel Monte Carlo
estimation. In particular, the method can be used to estimate expectations with respect to a …

Multilevel ensemble Kalman filtering for spatio-temporal processes

A Chernov, H Hoel, KJH Law, F Nobile… - Numerische …, 2021 - Springer
We design and analyse the performance of a multilevel ensemble Kalman filter method
(MLEnKF) for filtering settings where the underlying state-space model is an infinite …

Multilevel ensemble Kalman filtering based on a sample average of independent EnKF estimators

H Hoel, G Shaimerdenova, R Tempone - arXiv preprint arXiv:2002.00480, 2020 - arxiv.org
We introduce a new multilevel ensemble Kalman filter method (MLEnKF) which consists of a
hierarchy of independent samples of ensemble Kalman filters (EnKF). This new MLEnKF …

A multi-fidelity ensemble kalman filter with hyperreduced reduced-order models

G Donoghue, M Yano - Computer Methods in Applied Mechanics and …, 2022 - Elsevier
We present an efficient data assimilation framework for nonlinear dynamical systems that
uses multi-fidelity statistical estimates based on a full-order model and a projection-based …