Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods

J Thusberg, M Vihinen - Human mutation, 2009 - Wiley Online Library
Many gene defects are relatively easy to identify experimentally, but obtaining information
about the effects of sequence variations and elucidation of the detailed molecular …

Structural and functional constraints in the evolution of protein families

CL Worth, S Gong, TL Blundell - Nature Reviews Molecular Cell Biology, 2009 - nature.com
High-throughput genomic sequencing has focused attention on understanding differences
between species and between individuals. When this genetic variation affects protein …

SDM—a server for predicting effects of mutations on protein stability and malfunction

CL Worth, R Preissner, TL Blundell - Nucleic acids research, 2011 - academic.oup.com
The sheer volume of non-synonymous single nucleotide polymorphisms that have been
generated in recent years from projects such as the Human Genome Project, the HapMap …

Functional annotations improve the predictive score of human disease‐related mutations in proteins

R Calabrese, E Capriotti, P Fariselli… - Human …, 2009 - Wiley Online Library
Single nucleotide polymorphisms (SNPs) are the simplest and most frequent form of human
DNA variation, also valuable as genetic markers of disease susceptibility. The most …

Tumor risks and genotype–phenotype–proteotype analysis in 358 patients with germline mutations in SDHB and SDHD

CJ Ricketts, JR Forman, E Rattenberry… - Human …, 2010 - Wiley Online Library
Succinate dehydrogenase B (SDHB) and D (SDHD) subunit gene mutations predispose to
adrenal and extraadrenal pheochromocytomas, head and neck paragangliomas (HNPGL) …

Genetic testing for long-QT syndrome: distinguishing pathogenic mutations from benign variants

S Kapa, DJ Tester, BA Salisbury, C Harris-Kerr… - Circulation, 2009 - Am Heart Assoc
Background—Genetic testing for long-QT syndrome (LQTS) has diagnostic, prognostic, and
therapeutic implications. Hundreds of causative mutations in 12 known LQTS-susceptibility …

Atomic interactions and profile of small molecules disrupting protein–protein interfaces: the TIMBAL database

AP Higueruelo, A Schreyer… - Chemical biology & …, 2009 - Wiley Online Library
Growing evidence of the possibility of modulating protein–protein interactions with small
molecules is opening the door to new approaches and concepts in drug discovery. In this …

P450 Oxidoreductase deficiency: analysis of mutations and polymorphisms

FZ Burkhard, S Parween, SS Udhane, CE Flück… - The Journal of steroid …, 2017 - Elsevier
Cytochrome P450 oxidoreductase (POR) is required for metabolic reactions of steroid and
drug metabolizing cytochrome P450 proteins located in endoplasmic reticulum. Mutations in …

[HTML][HTML] Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning

N Zhao, JG Han, CR Shyu, D Korkin - PLoS computational biology, 2014 - journals.plos.org
Single nucleotide polymorphisms (SNPs) are among the most common types of genetic
variation in complex genetic disorders. A growing number of studies link the functional role …

VHL Gene Mutations and Their Effects on Hypoxia Inducible Factor HIFα: Identification of Potential Driver and Passenger Mutations

MP Rechsteiner, A von Teichman, A Nowicka, T Sulser… - Cancer research, 2011 - AACR
Mutations of the von Hippel-Lindau (VHL) gene are frequent in clear cell renal cell
carcinomas (ccRCC). Nonsense and frameshift mutations abrogate the function of the VHL …