[HTML][HTML] Transcriptome data are insufficient to control false discoveries in regulatory network inference

E Kernfeld, R Keener, P Cahan, A Battle - Cell Systems, 2024 - cell.com
Inference of causal transcriptional regulatory networks (TRNs) from transcriptomic data
suffers notoriously from false positives. Approaches to control the false discovery rate (FDR) …

A systematic comparison of computational methods for expression forecasting

E Kernfeld, Y Yang, JS Weinstock, A Battle, P Cahan - BioRxiv, 2023 - biorxiv.org
Due to the abundance of single cell RNA-seq data, a number of methods for predicting
expression after perturbation have recently been published. Expression prediction methods …

[图书][B] Computational Tools for Modeling Heterogeneity Within Cell Populations

M Saint-Antoine - 2023 - search.proquest.com
Sometimes cells within the same population exhibit di↵ erent characteristics, even when
they have the same DNA. This non-genetic heterogeneity is not only interesting as a …