Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters

KR Zenger, MS Khatkar, DB Jones… - Frontiers in …, 2019 - frontiersin.org
Within aquaculture industries, selection based on genomic information (genomic selection)
has the profound potential to change genetic improvement programs and production …

Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90

D Lourenco, A Legarra, S Tsuruta, Y Masuda, I Aguilar… - Genes, 2020 - mdpi.com
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …

[HTML][HTML] Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability

JT Howard, JE Pryce, C Baes, C Maltecca - Journal of dairy science, 2017 - Elsevier
Traditionally, pedigree-based relationship coefficients have been used to manage the
inbreeding and degree of inbreeding depression that exists within a population. The …

KAML: improving genomic prediction accuracy of complex traits using machine learning determined parameters

L Yin, H Zhang, X Zhou, X Yuan, S Zhao, X Li, X Liu - Genome biology, 2020 - Springer
Advances in high-throughput sequencing technologies have reduced the cost of genotyping
dramatically and led to genomic prediction being widely used in animal and plant breeding …

Evaluation of genome-enabled selection for bacterial cold water disease resistance using progeny performance data in rainbow trout: insights on genotyping methods …

RL Vallejo, TD Leeds, BO Fragomeni, G Gao… - Frontiers in …, 2016 - frontiersin.org
Bacterial cold water disease (BCWD) causes significant economic losses in salmonid
aquaculture, and traditional family-based breeding programs aimed at improving BCWD …

A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens

C Dadousis, A Somavilla, JJ Ilska, M Johnsson… - Genetics Selection …, 2021 - Springer
Background Body weight (BW) is an economically important trait in the broiler (meat-type
chickens) industry. Under the assumption of polygenicity, a “large” number of genes with …

Using visual scores for genomic prediction of complex traits in breeding programs

CF Azevedo, LFV Ferrão, J Benevenuto… - Theoretical and Applied …, 2024 - Springer
Key message An approach for handling visual scores with potential errors and subjectivity in
scores was evaluated in simulated and blueberry recurrent selection breeding schemes to …

[HTML][HTML] Predicting bull fertility using genomic data and biological information

R Abdollahi-Arpanahi, G Morota… - Journal of Dairy Science, 2017 - Elsevier
The genomic prediction of unobserved genetic values or future phenotypes for complex
traits has revolutionized agriculture and human medicine. Fertility traits are undoubtedly …

Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species

H Song, H Hu - Evolutionary Applications, 2022 - Wiley Online Library
Genomic selection (GS) has great potential to increase genetic gain in aquaculture
breeding; however, its implementation is hindered owing to high genotyping cost and the …

[HTML][HTML] Symposium review: Building a better cow—The Australian experience and future perspectives

JE Pryce, TTT Nguyen, M Axford, G Nieuwhof… - Journal of dairy …, 2018 - Elsevier
Genomic selection has led to opportunities for developing new breeding values that rely on
phenotypes in dedicated reference populations of genotyped cows. In Australia, it has been …