[HTML][HTML] Advances and trends in omics technology development

X Dai, L Shen - Frontiers in Medicine, 2022 - frontiersin.org
The human history has witnessed the rapid development of technologies such as high-
throughput sequencing and mass spectrometry that led to the concept of 'omics' and …

Protein interaction networks in neurodegenerative diseases: From physiological function to aggregation

G Calabrese, C Molzahn, T Mayor - Journal of Biological Chemistry, 2022 - ASBMB
The accumulation of protein inclusions is linked to many neurodegenerative diseases that
typically develop in older individuals, due to a combination of genetic and environmental …

PaxDb 5.0: curated protein quantification data suggests adaptive proteome changes in yeasts

Q Huang, D Szklarczyk, M Wang, M Simonovic… - Molecular & Cellular …, 2023 - ASBMB
Abstract The" Protein Abundances Across Organisms" database (PaxDb) is an integrative
metaresource dedicated to protein abundance levels, in tissue-specific or whole-organism …

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery

PC Havugimana, RK Goel, S Phanse, A Youssef… - Nature …, 2022 - nature.com
Co-fractionation/mass spectrometry (CF/MS) enables the mapping of endogenous
macromolecular networks on a proteome scale, but current methods are experimentally …

Omics in systems biology: current progress and future outlook

TD Veenstra - Proteomics, 2021 - Wiley Online Library
Biological research has undergone tremendous changes over the past three decades.
Research used to almost exclusively focus on a single aspect of a single molecule per …

DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes

F Frommelt, A Fossati, F Uliana, F Wendt, P Xue… - Nature …, 2024 - nature.com
Most proteins are organized in macromolecular assemblies, which represent key functional
units regulating and catalyzing most cellular processes. Affinity purification of the protein of …

Meta-analysis defines principles for the design and analysis of co-fractionation mass spectrometry experiments

MA Skinnider, LJ Foster - Nature Methods, 2021 - nature.com
Co-fractionation mass spectrometry (CF-MS) has emerged as a powerful technique for
interactome mapping. However, there is little consensus on optimal strategies for the design …

PCprophet: a framework for protein complex prediction and differential analysis using proteomic data

A Fossati, C Li, F Uliana, F Wendt, F Frommelt… - Nature …, 2021 - nature.com
Despite the availability of methods for analyzing protein complexes, systematic analysis of
complexes under multiple conditions remains challenging. Approaches based on …

A genome-wide association study of tinnitus reveals shared genetic links to neuropsychiatric disorders

IS Bhatt, N Wilson, R Dias, A Torkamani - Scientific reports, 2022 - nature.com
Tinnitus, a phantom perception of sound in the absence of any external sound source, is a
prevalent health condition often accompanied by psychiatric comorbidities. Recent genome …

[HTML][HTML] Iron-sulfur cluster biogenesis, trafficking, and signaling: Roles for CGFS glutaredoxins and BolA proteins

EA Talib, CE Outten - Biochimica et Biophysica Acta (BBA)-Molecular Cell …, 2021 - Elsevier
The synthesis and trafficking of iron-sulfur (Fe-S) clusters in both prokaryotes and
eukaryotes requires coordination within an expanding network of proteins that function in the …