Twenty years of plant genome sequencing: achievements and challenges
Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …
reference genome, in December 2000 heralded the beginning of the plant genome era …
Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …
genome doubling. Homoeologous chromosomes (chromosomes with common shared …
Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum
Abstract Chrysanthemum (Chrysanthemum morifolium Ramat.) is a globally important
ornamental plant with great economic, cultural, and symbolic value. However, research on …
ornamental plant with great economic, cultural, and symbolic value. However, research on …
Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum
Saccharum spontaneum is a founding Saccharum species and exhibits wide variation in
ploidy levels. We have assembled a high-quality autopolyploid genome of S. spontaneum …
ploidy levels. We have assembled a high-quality autopolyploid genome of S. spontaneum …
SubPhaser: a robust allopolyploid subgenome phasing method based on subgenome‐specific k‐mers
KH Jia, ZX Wang, L Wang, GY Li, W Zhang… - New …, 2022 - Wiley Online Library
With advanced sequencing technology, dozens of complex polyploid plant genomes have
been characterized. However, for many polyploid species, their diploid ancestors are …
been characterized. However, for many polyploid species, their diploid ancestors are …
Haplotype-resolved genomes of wild octoploid progenitors illuminate genomic diversifications from wild relatives to cultivated strawberry
Strawberry is an emerging model for studying polyploid genome evolution and rapid
domestication of fruit crops. Here we report haplotype-resolved genomes of two wild …
domestication of fruit crops. Here we report haplotype-resolved genomes of two wild …
Chromosome-level and haplotype-resolved genome provides insight into the tetraploid hybrid origin of patchouli
Y Shen, W Li, Y Zeng, Z Li, Y Chen, J Zhang… - Nature …, 2022 - nature.com
Abstract Patchouli (Pogostemon cablin (Blanco) Benth.), a member of the Lamiaceae family,
is an important aromatic plant that has been widely used in medicine and perfumery. Here …
is an important aromatic plant that has been widely used in medicine and perfumery. Here …
Transposon signatures of allopolyploid genome evolution
AM Session, DS Rokhsar - Nature Communications, 2023 - nature.com
Hybridization brings together chromosome sets from two or more distinct progenitor species.
Genome duplication associated with hybridization, or allopolyploidy, allows these …
Genome duplication associated with hybridization, or allopolyploidy, allows these …
Genome sequencing reveals chromosome fusion and extensive expansion of genes related to secondary metabolism in Artemisia argyi
Y Miao, D Luo, T Zhao, H Du, Z Liu, Z Xu… - Plant biotechnology …, 2022 - Wiley Online Library
Artemisia argyi, as famous as Artemisia annua, is a medicinal plant with huge economic
value in the genus of Artemisia and has been widely used in the world for about 3000 years …
value in the genus of Artemisia and has been widely used in the world for about 3000 years …
Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes
Scaffolding is crucial for constructing most chromosome-level genomes. The high-
throughput chromatin conformation capture (Hi-C) technology has become the primary …
throughput chromatin conformation capture (Hi-C) technology has become the primary …