Transcription factor-based biosensors in biotechnology: current state and future prospects

R Mahr, J Frunzke - Applied microbiology and biotechnology, 2016 - Springer
Living organisms have evolved a plethora of sensing systems for the intra-and extracellular
detection of small molecules, ions or physical parameters. Several recent studies have …

Population heterogeneity in microbial bioprocesses: origin, analysis, mechanisms, and future perspectives

AL Heins, D Weuster-Botz - Bioprocess and biosystems engineering, 2018 - Springer
Population heterogeneity is omnipresent in all bioprocesses even in homogenous
environments. Its origin, however, is only so well understood that potential strategies like bet …

Lagrangian trajectories to predict the formation of population heterogeneity in large-scale bioreactors

M Kuschel, F Siebler, R Takors - Bioengineering, 2017 - mdpi.com
Successful scale-up of bioprocesses requires that laboratory-scale performance is equally
achieved during large-scale production to meet economic constraints. In industry, heuristic …

Enhancing metaproteomics—the value of models and defined environmental microbial systems

FA Herbst, V Lünsmann, H Kjeldal, N Jehmlich… - …, 2016 - Wiley Online Library
Metaproteomics—the large‐scale characterization of the entire protein complement of
environmental microbiota at a given point in time—has provided new features to study …

Next-generation proteomics faces new challenges in environmental biotechnology

J Armengaud - Current opinion in biotechnology, 2016 - Elsevier
Highlights•A new generation of mass analyzers is dramatically changing proteomics
throughput.•Proteogenomics consists of the combination of genomic, transcriptomic, and …

Quantitation and comparison of phenotypic heterogeneity among single cells of monoclonal microbial populations

F Calabrese, I Voloshynovska, F Musat… - Frontiers in …, 2019 - frontiersin.org
Phenotypic heterogeneity within microbial populations arises even when the cells are
exposed to putatively constant and homogeneous conditions. The outcome of this …

Pseudomonas putida rDNA is a favored site for the expression of biosynthetic genes

A Domröse, J Hage-Hülsmann, S Thies, R Weihmann… - Scientific reports, 2019 - nature.com
Since high-value bacterial secondary metabolites, including antibiotics, are often naturally
produced in only low amounts, their efficient biosynthesis typically requires the transfer of …

Cytometry meets next-generation sequencing–RNA-Seq of sorted subpopulations reveals regional replication and iron-triggered prophage induction in …

R Freiherr von Boeselager, E Pfeifer, J Frunzke - Scientific Reports, 2018 - nature.com
Phenotypic diversification is key to microbial adaptation. Currently, advanced technological
approaches offer insights into cell-to-cell variation of bacterial populations at a …

Potential of integrating model-based design of experiments approaches and process analytical technologies for bioprocess scale-down

P Neubauer, E Anane, S Junne… - … Twins: Applications to …, 2021 - Springer
Typically, bioprocesses on an industrial scale are dynamic systems with a certain degree of
variability, system inhomogeneities, and even population heterogeneities. Therefore, the …

Non-random distribution of macromolecules as driving forces for phenotypic variation

M Jahn, S Günther, S Müller - Current opinion in microbiology, 2015 - Elsevier
Highlights•Clonal cultures employ strategies for diversification to encounter constraints.•Cell
division is a major source of phenotypic variation due to unequal partitioning of cellular …