Geometric deep learning on molecular representations
Geometric deep learning (GDL) is based on neural network architectures that incorporate
and process symmetry information. GDL bears promise for molecular modelling applications …
and process symmetry information. GDL bears promise for molecular modelling applications …
[HTML][HTML] Structure-based drug design with geometric deep learning
Abstract Structure-based drug design uses three-dimensional geometric information of
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …
macromolecules, such as proteins or nucleic acids, to identify suitable ligands. Geometric …
3d infomax improves gnns for molecular property prediction
Molecular property prediction is one of the fastest-growing applications of deep learning with
critical real-world impacts. Although the 3D molecular graph structure is necessary for …
critical real-world impacts. Although the 3D molecular graph structure is necessary for …
[HTML][HTML] Spice, a dataset of drug-like molecules and peptides for training machine learning potentials
Abstract Machine learning potentials are an important tool for molecular simulation, but their
development is held back by a shortage of high quality datasets to train them on. We …
development is held back by a shortage of high quality datasets to train them on. We …
[HTML][HTML] Leveraging large language models for predictive chemistry
KM Jablonka, P Schwaller… - Nature Machine …, 2024 - nature.com
Abstract Machine learning has transformed many fields and has recently found applications
in chemistry and materials science. The small datasets commonly found in chemistry …
in chemistry and materials science. The small datasets commonly found in chemistry …
[HTML][HTML] Prospective de novo drug design with deep interactome learning
De novo drug design aims to generate molecules from scratch that possess specific
chemical and pharmacological properties. We present a computational approach utilizing …
chemical and pharmacological properties. We present a computational approach utilizing …
[HTML][HTML] Past, present, and future perspectives on computer-aided drug design methodologies
The application of computational approaches in drug discovery has been consolidated in
the last decades. These families of techniques are usually grouped under the common …
the last decades. These families of techniques are usually grouped under the common …
Is GPT-3 all you need for low-data discovery in chemistry?
Machine learning has revolutionized many fields and has recently found applications in
chemistry and materials science. The small datasets commonly found in chemistry lead to …
chemistry and materials science. The small datasets commonly found in chemistry lead to …
[HTML][HTML] Enabling late-stage drug diversification by high-throughput experimentation with geometric deep learning
Late-stage functionalization is an economical approach to optimize the properties of drug
candidates. However, the chemical complexity of drug molecules often makes late-stage …
candidates. However, the chemical complexity of drug molecules often makes late-stage …
[HTML][HTML] Δ-Quantum machine-learning for medicinal chemistry
Many molecular design tasks benefit from fast and accurate calculations of quantum-
mechanical (QM) properties. However, the computational cost of QM methods applied to …
mechanical (QM) properties. However, the computational cost of QM methods applied to …