Toward the dynamic interactome: it's about time
TM Przytycka, M Singh, DK Slonim - Briefings in bioinformatics, 2010 - academic.oup.com
Dynamic molecular interactions play a central role in regulating the functioning of cells and
organisms. The availability of experimentally determined large-scale cellular networks …
organisms. The availability of experimentally determined large-scale cellular networks …
Recent advances in clustering methods for protein interaction networks
The increasing availability of large-scale protein-protein interaction data has made it
possible to understand the basic components and organization of cell machinery from the …
possible to understand the basic components and organization of cell machinery from the …
[图书][B] Protein interaction networks: computational analysis
A Zhang - 2009 - books.google.com
The analysis of protein-protein interactions is fundamental to the understanding of cellular
organization, processes, and functions. Recent large-scale investigations of protein-protein …
organization, processes, and functions. Recent large-scale investigations of protein-protein …
Semantic integration to identify overlapping functional modules in protein interaction networks
Background The systematic analysis of protein-protein interactions can enable a better
understanding of cellular organization, processes and functions. Functional modules can be …
understanding of cellular organization, processes and functions. Functional modules can be …
Protein complex identification by supervised graph local clustering
Motivation: Protein complexes integrate multiple gene products to coordinate many
biological functions. Given a graph representing pairwise protein interaction data one can …
biological functions. Given a graph representing pairwise protein interaction data one can …
Current and future directions in network biology
Network biology, an interdisciplinary field at the intersection of computational and biological
sciences, is critical for deepening understanding of cellular functioning and disease. While …
sciences, is critical for deepening understanding of cellular functioning and disease. While …
Protein-to-protein interactions: Technologies, databases, and algorithms
Studying proteins and their structures has an important role for understanding protein
functionalities. Recently, due to important results obtained with proteomics, a great interest …
functionalities. Recently, due to important results obtained with proteomics, a great interest …
Scalable steady state analysis of Boolean biological regulatory networks
Background Computing the long term behavior of regulatory and signaling networks is
critical in understanding how biological functions take place in organisms. Steady states of …
critical in understanding how biological functions take place in organisms. Steady states of …
Pan-genomics: Applications, challenges, and future prospects
Pan-genomics: Applications, Challenges, and Future Prospects covers current approaches,
challenges and future prospects of pan-genomics. The book discusses bioinformatics tools …
challenges and future prospects of pan-genomics. The book discusses bioinformatics tools …
AlignMCL: Comparative analysis of protein interaction networks through Markov clustering
Evolutionary analysis and comparison of biological networks may result in the identification
of conserved mechanism between species as well as conserved modules, such as protein …
of conserved mechanism between species as well as conserved modules, such as protein …