Genotyping errors: causes, consequences and solutions

F Pompanon, A Bonin, E Bellemain… - Nature Reviews …, 2005 - nature.com
Although genotyping errors affect most data and can markedly influence the biological
conclusions of a study, they are too often neglected. Errors have various causes, but their …

Microsatellite null alleles in parentage analysis

EE Dakin, JC Avise - Heredity, 2004 - nature.com
Highly polymorphic microsatellite markers are widely employed in population genetic
analyses (eg, of biological parentage and mating systems), but one potential drawback is …

microchecker: software for identifying and correcting genotyping errors in microsatellite data

C Van Oosterhout, WF Hutchinson… - Molecular ecology …, 2004 - Wiley Online Library
DNA degradation, low DNA concentrations and primer‐site mutations may result in the
incorrect assignment of microsatellite genotypes, potentially biasing population genetic …

Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants

H Nybom - Molecular ecology, 2004 - Wiley Online Library
A compilation was made of 307 studies using nuclear DNA markers for evaluating among‐
and within‐population diversity in wild angiosperms and gymnosperms. Estimates derived …

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

KA Selkoe, RJ Toonen - Ecology letters, 2006 - Wiley Online Library
Recent improvements in genetic analysis and genotyping methods have resulted in a rapid
expansion of the power of molecular markers to address ecological questions …

[图书][B] DNA fingerprinting in plants: principles, methods, and applications

K Weising, H Nybom, M Pfenninger, K Wolff, G Kahl - 2005 - taylorfrancis.com
Given the explosive development of new molecular marker techniques over the last decade,
newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow …

Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad …

H Krehenwinkel, A Pomerantz, JB Henderson… - …, 2019 - academic.oup.com
Background In light of the current biodiversity crisis, DNA barcoding is developing into an
essential tool to quantify state shifts in global ecosystems. Current barcoding protocols often …

Reliable selfing rate estimates from imperfect population genetic data

P David, B Pujol, F Viard, V Castella… - Molecular …, 2007 - Wiley Online Library
Genotypic frequencies at codominant marker loci in population samples convey information
on mating systems. A classical way to extract this information is to measure heterozygote …

Noninvasive population genetics: a review of sample source, diet, fragment length and microsatellite motif effects on amplification success and genotyping error rates

T Broquet, N Ménard, E Petit - Conservation Genetics, 2007 - Springer
Noninvasive population genetics has found many applications in ecology and conservation
biology. However, the technical difficulties inherent to the analysis of low quantities of DNA …

Mitigating scoring errors in microsatellite data from wild populations

J DeWoody, JD Nason, VD Hipkins - Molecular Ecology Notes, 2006 - Wiley Online Library
Microsatellite data are widely used to test ecological and evolutionary hypotheses in wild
populations. In this paper, we consider three typical sources of scoring errors capable of …