Genotyping errors: causes, consequences and solutions
F Pompanon, A Bonin, E Bellemain… - Nature Reviews …, 2005 - nature.com
Although genotyping errors affect most data and can markedly influence the biological
conclusions of a study, they are too often neglected. Errors have various causes, but their …
conclusions of a study, they are too often neglected. Errors have various causes, but their …
Microsatellite null alleles in parentage analysis
EE Dakin, JC Avise - Heredity, 2004 - nature.com
Highly polymorphic microsatellite markers are widely employed in population genetic
analyses (eg, of biological parentage and mating systems), but one potential drawback is …
analyses (eg, of biological parentage and mating systems), but one potential drawback is …
micro‐checker: software for identifying and correcting genotyping errors in microsatellite data
C Van Oosterhout, WF Hutchinson… - Molecular ecology …, 2004 - Wiley Online Library
DNA degradation, low DNA concentrations and primer‐site mutations may result in the
incorrect assignment of microsatellite genotypes, potentially biasing population genetic …
incorrect assignment of microsatellite genotypes, potentially biasing population genetic …
Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants
H Nybom - Molecular ecology, 2004 - Wiley Online Library
A compilation was made of 307 studies using nuclear DNA markers for evaluating among‐
and within‐population diversity in wild angiosperms and gymnosperms. Estimates derived …
and within‐population diversity in wild angiosperms and gymnosperms. Estimates derived …
Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers
Recent improvements in genetic analysis and genotyping methods have resulted in a rapid
expansion of the power of molecular markers to address ecological questions …
expansion of the power of molecular markers to address ecological questions …
[图书][B] DNA fingerprinting in plants: principles, methods, and applications
Given the explosive development of new molecular marker techniques over the last decade,
newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow …
newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow …
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad …
H Krehenwinkel, A Pomerantz, JB Henderson… - …, 2019 - academic.oup.com
Background In light of the current biodiversity crisis, DNA barcoding is developing into an
essential tool to quantify state shifts in global ecosystems. Current barcoding protocols often …
essential tool to quantify state shifts in global ecosystems. Current barcoding protocols often …
Reliable selfing rate estimates from imperfect population genetic data
Genotypic frequencies at codominant marker loci in population samples convey information
on mating systems. A classical way to extract this information is to measure heterozygote …
on mating systems. A classical way to extract this information is to measure heterozygote …
Noninvasive population genetics: a review of sample source, diet, fragment length and microsatellite motif effects on amplification success and genotyping error rates
Noninvasive population genetics has found many applications in ecology and conservation
biology. However, the technical difficulties inherent to the analysis of low quantities of DNA …
biology. However, the technical difficulties inherent to the analysis of low quantities of DNA …
Mitigating scoring errors in microsatellite data from wild populations
J DeWoody, JD Nason, VD Hipkins - Molecular Ecology Notes, 2006 - Wiley Online Library
Microsatellite data are widely used to test ecological and evolutionary hypotheses in wild
populations. In this paper, we consider three typical sources of scoring errors capable of …
populations. In this paper, we consider three typical sources of scoring errors capable of …