Horizontal gene transfer and adaptive evolution in bacteria

BJ Arnold, IT Huang, WP Hanage - Nature Reviews Microbiology, 2022 - nature.com
Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial
evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can …

The microbiota-gut-brain axis

JF Cryan, KJ O'Riordan, CSM Cowan… - Physiological …, 2019 - journals.physiology.org
I. INTRODUCTION 1877 II. STUDYING THE... 1881 III. MICROBIOTA-GUT-BRAIN AXIS...
1907 IV. PATHWAYS OF COMMUNICATION 1911 V. MICROBIOTA AND SYNAPTIC... 1929 …

Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome

S Nayfach, D Páez-Espino, L Call, SJ Low… - Nature …, 2021 - nature.com
Bacteriophages have important roles in the ecology of the human gut microbiome but are
under-represented in reference databases. To address this problem, we assembled the …

Rapid evolutionary turnover of mobile genetic elements drives bacterial resistance to phages

FA Hussain, J Dubert, J Elsherbini, M Murphy… - Science, 2021 - science.org
Although it is generally accepted that phages drive bacterial evolution, how these dynamics
play out in the wild remains poorly understood. We found that susceptibility to viral killing in …

Function and functional redundancy in microbial systems

S Louca, MF Polz, F Mazel, MBN Albright… - Nature ecology & …, 2018 - nature.com
Microbial communities often exhibit incredible taxonomic diversity, raising questions
regarding the mechanisms enabling species coexistence and the role of this diversity in …

Life history strategies among soil bacteria—dichotomy for few, continuum for many

BWG Stone, P Dijkstra, BK Finley, R Fitzpatrick… - The ISME …, 2023 - academic.oup.com
Study of life history strategies may help predict the performance of microorganisms in nature
by organizing the complexity of microbial communities into groups of organisms with similar …

Emergent simplicity in microbial community assembly

JE Goldford, N Lu, D Bajić, S Estrela, M Tikhonov… - Science, 2018 - science.org
A major unresolved question in microbiome research is whether the complex taxonomic
architectures observed in surveys of natural communities can be explained and predicted by …

Phage puppet masters of the marine microbial realm

M Breitbart, C Bonnain, K Malki, NA Sawaya - Nature microbiology, 2018 - nature.com
Viruses numerically dominate our oceans; however, we have only just begun to document
the diversity, host range and infection dynamics of marine viruses, as well as the subsequent …

Where less may be more: how the rare biosphere pulls ecosystems strings

A Jousset, C Bienhold, A Chatzinotas… - The ISME …, 2017 - academic.oup.com
Rare species are increasingly recognized as crucial, yet vulnerable components of Earth's
ecosystems. This is also true for microbial communities, which are typically composed of a …

Interactions between bacteriophage, bacteria, and the mammalian immune system

JD Van Belleghem, K Dąbrowska, M Vaneechoutte… - Viruses, 2018 - mdpi.com
The human body is host to large numbers of bacteriophages (phages)–a diverse group of
bacterial viruses that infect bacteria. Phage were previously regarded as bystanders that …