Cold-induced Arabidopsis FRIGIDA nuclear condensates for FLC repression

P Zhu, C Lister, C Dean - Nature, 2021 - nature.com
Plants use seasonal temperature cues to time the transition to reproduction. In Arabidopsis
thaliana, winter cold epigenetically silences the floral repressor locus FLOWERING LOCUS …

OMICs, epigenetics, and genome editing techniques for food and nutritional security

YV Gogolev, S Ahmar, BA Akpinar, H Budak… - Plants, 2021 - mdpi.com
The incredible success of crop breeding and agricultural innovation in the last century
greatly contributed to the Green Revolution, which significantly increased yields and …

G-quadruplex structures trigger RNA phase separation

Y Zhang, M Yang, S Duncan, X Yang… - Nucleic acids …, 2019 - academic.oup.com
Liquid–liquid phase separation plays an important role in a variety of cellular processes,
including the formation of membrane-less organelles, the cytoskeleton, signalling …

Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions

T Dumur, S Duncan, K Graumann, S Desset… - Nucleus, 2019 - Taylor & Francis
The eukaryotic cell nucleus is a central organelle whose architecture determines genome
function at multiple levels. Deciphering nuclear organizing principles influencing cellular …

Phase separation of HRLP regulates flowering time in Arabidopsis

Y Zhang, S Fan, C Hua, ZWN Teo, JX Kiang, L Shen… - Science …, 2022 - science.org
RNA binding proteins mediate posttranscriptional RNA metabolism and play regulatory roles
in many developmental processes in eukaryotes. Despite their known effects on the floral …

Noncoding SNPs influence a distinct phase of Polycomb silencing to destabilize long-term epigenetic memory at Arabidopsis FLC

JI Qüesta, RL Antoniou-Kourounioti… - Genes & …, 2020 - genesdev.cshlp.org
In Arabidopsis thaliana, the cold-induced epigenetic regulation of FLOWERING LOCUS C
(FLC) involves distinct phases of Polycomb repressive complex 2 (PRC2) silencing. During …

Integrating analog and digital modes of gene expression at Arabidopsis FLC

RL Antoniou-Kourounioti, A Meschichi, S Reeck… - Elife, 2023 - elifesciences.org
Quantitative gene regulation at the cell population level can be achieved by two
fundamentally different modes of regulation at individual gene copies. A 'digital'mode …

Spatially resolved transcriptomics reveals plant host responses to pathogens

M Giolai, W Verweij, A Lister, D Heavens, I Macaulay… - Plant Methods, 2019 - Springer
Background Thorough understanding of complex model systems requires the
characterisation of processes in different cell types of an organism. This can be achieved …

Reference genes for quantitative Arabidopsis single molecule RNA fluorescence in situ hybridization

S Duncan, HE Johansson, Y Ding - Journal of Experimental …, 2023 - academic.oup.com
Subcellular mRNA quantities and spatial distributions are fundamental for driving gene
regulatory programmes. Single molecule RNA fluorescence in situ hybridization (smFISH) …

The Existence and Localization of Nuclear snoRNAs in Arabidopsis thaliana Revisited

D Streit, T Shanmugam, A Garbelyanski, S Simm… - Plants, 2020 - mdpi.com
Ribosome biogenesis is one cell function-defining process. It depends on efficient
transcription of rDNAs in the nucleolus as well as on the cytosolic synthesis of ribosomal …