Gradients in gene essentiality reshape antibacterial research
AM Hogan, ST Cardona - FEMS Microbiology Reviews, 2022 - academic.oup.com
Essential genes encode the processes that are necessary for life. Until recently, commonly
applied binary classifications left no space between essential and non-essential genes. In …
applied binary classifications left no space between essential and non-essential genes. In …
[HTML][HTML] Visualizing translation dynamics at atomic detail inside a bacterial cell
Translation is the fundamental process of protein synthesis and is catalysed by the ribosome
in all living cells. Here we use advances in cryo-electron tomography and sub-tomogram …
in all living cells. Here we use advances in cryo-electron tomography and sub-tomogram …
Transposon sequencing: A powerful tool for the functional genomic study of food-borne pathogens
Background Genome-wide functional genetic studies of food-borne pathogens could
provide a comprehensive understanding of the mechanisms underline their survival and …
provide a comprehensive understanding of the mechanisms underline their survival and …
SURE editing: combining oligo-recombineering and programmable insertion/deletion of selection markers to efficiently edit the Mycoplasma pneumoniae genome
C Pinero-Lambea, E Garcia-Ramallo… - Nucleic Acids …, 2022 - academic.oup.com
The development of advanced genetic tools is boosting microbial engineering which can
potentially tackle wide-ranging challenges currently faced by our society. Here we present …
potentially tackle wide-ranging challenges currently faced by our society. Here we present …
The predicting public sentiment evolution on public emergencies under deep learning and internet of things
M Chen, W Du - The Journal of Supercomputing, 2023 - Springer
With the Internet's rapid development and the increasing amount of netizens, social
contradictions frequently manifest over the Internet. Public emergencies develop and spread …
contradictions frequently manifest over the Internet. Public emergencies develop and spread …
ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small ORFs
S Miravet-Verde, R Mazzolini, C Segura-Morales… - nature …, 2024 - nature.com
Identifying open reading frames (ORFs) being translated is not a trivial task. ProTInSeq is a
technique designed to characterize proteomes by sequencing transposon insertions …
technique designed to characterize proteomes by sequencing transposon insertions …
[PDF][PDF] Comprehensive understanding of Tn5 insertion preference improves transcription regulatory element identification
Tn5 transposase, which can efficiently tagment the genome, has been widely adopted as a
molecular tool in next-generation sequencing, from short-read sequencing to more complex …
molecular tool in next-generation sequencing, from short-read sequencing to more complex …
[HTML][HTML] Engineering Mycoplasma pneumoniae to bypass the association with Guillain-Barré syndrome
A Broto, C Piñero-Lambea, C Segura-Morales… - Microbes and …, 2024 - Elsevier
A non-pathogenic Mycoplasma pneumoniae-based chassis is leading the development of
live biotherapeutic products (LBPs) for respiratory diseases. However, reports connecting …
live biotherapeutic products (LBPs) for respiratory diseases. However, reports connecting …
Identification of putative essential protein domains from high-density transposon insertion sequencing
ASMZ Rahman, L Timmerman, F Gallardo… - Scientific Reports, 2022 - nature.com
A first clue to gene function can be obtained by examining whether a gene is required for life
in certain standard conditions, that is, whether a gene is essential. In bacteria, essential …
in certain standard conditions, that is, whether a gene is essential. In bacteria, essential …
LoxTnSeq: random transposon insertions combined with cre/lox recombination and counterselection to generate large random genome reductions
D Shaw, S Miravet‐Verde… - Microbial …, 2021 - Wiley Online Library
The removal of unwanted genetic material is a key aspect in many synthetic biology efforts
and often requires preliminary knowledge of which genomic regions are dispensable …
and often requires preliminary knowledge of which genomic regions are dispensable …