Population genomics for wildlife conservation and management

PA Hohenlohe, WC Funk, OP Rajora - Molecular Ecology, 2021 - Wiley Online Library
Biodiversity is under threat worldwide. Over the past decade, the field of population
genomics has developed across nonmodel organisms, and the results of this research have …

[HTML][HTML] A review on marine plastisphere: biodiversity, formation, and role in degradation

Y Du, X Liu, X Dong, Z Yin - Computational and Structural Biotechnology …, 2022 - Elsevier
The pollution of plastic waste has become an increasingly serious environmental crisis.
Recently, plastic has been detected in various kinds of environments, even in human …

ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone

A Srivathsan, L Lee, K Katoh, E Hartop, SN Kutty… - BMC biology, 2021 - Springer
Background DNA barcodes are a useful tool for discovering, understanding, and monitoring
biodiversity which are critical tasks at a time of rapid biodiversity loss. However, widespread …

[HTML][HTML] Nematode-based indices in soil ecology: Application, utility, and future directions

G Du Preez, M Daneel, R De Goede, MJ Du Toit… - Soil Biology and …, 2022 - Elsevier
The health and functioning of soil ecosystems are the foundation of sustainable food
production and land management. Of key importance in achieving sustainability, is the …

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

A practical guide to DNA metabarcoding for entomological ecologists

M Liu, LJ Clarke, SC Baker, GJ Jordan… - Ecological …, 2020 - Wiley Online Library
1. DNA metabarcoding is a cost‐effective species identification approach with great potential
to assist entomological ecologists. This review presents a practical guide to help …

[HTML][HTML] Computational methods for 16S metabarcoding studies using Nanopore sequencing data

A Santos, R van Aerle, L Barrientos… - Computational and …, 2020 - Elsevier
Assessment of bacterial diversity through sequencing of 16S ribosomal RNA (16S rRNA)
genes has been an approach widely used in environmental microbiology, particularly since …

Freshwater monitoring by nanopore sequencing

L Urban, A Holzer, JJ Baronas, MB Hall… - Elife, 2021 - elifesciences.org
While traditional microbiological freshwater tests focus on the detection of specific bacterial
indicator species, including pathogens, direct tracing of all aquatic DNA through …

Identification of plastic-associated species in the Mediterranean Sea using DNA metabarcoding with Nanopore MinION

K Davidov, E Iankelevich-Kounio, I Yakovenko… - Scientific reports, 2020 - nature.com
Plastic debris in the ocean form a new ecosystem, termed 'plastisphere', which hosts a
variety of marine organisms. Recent studies implemented DNA metabarcoding to …

Rapid, large-scale species discovery in hyperdiverse taxa using 1D MinION sequencing

A Srivathsan, E Hartop, J Puniamoorthy, WT Lee… - BMC biology, 2019 - Springer
Background More than 80% of all animal species remain unknown to science. Most of these
species live in the tropics and belong to animal taxa that combine small body size with high …