Linking plant secondary metabolites and plant microbiomes: a review

Z Pang, J Chen, T Wang, C Gao, Z Li, L Guo… - Frontiers in plant …, 2021 - frontiersin.org
Plant secondary metabolites (PSMs) play many roles including defense against pathogens,
pests, and herbivores; response to environmental stresses, and mediating organismal …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

H Mallick, EA Franzosa, LJ Mclver, S Banerjee… - Nature …, 2019 - nature.com
Microbial community metabolomics, particularly in the human gut, are beginning to provide a
new route to identify functions and ecology disrupted in disease. However, these data can …

The potential of genomics for restoring ecosystems and biodiversity

MF Breed, PA Harrison, C Blyth, M Byrne… - Nature Reviews …, 2019 - nature.com
Billions of hectares of natural ecosystems have been degraded through human actions. The
global community has agreed on targets to halt and reverse these declines, and the …

Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill

OU Mason, NM Scott, A Gonzalez… - The ISME …, 2014 - academic.oup.com
Abstract The Deepwater Horizon (DWH) oil spill in the spring of 2010 resulted in an input
of∼ 4.1 million barrels of oil to the Gulf of Mexico;> 22% of this oil is unaccounted for, with …

Computational meta'omics for microbial community studies

N Segata, D Boernigen, TL Tickle… - Molecular systems …, 2013 - embopress.org
Complex microbial communities are an integral part of the Earth's ecosystem and of our
bodies in health and disease. In the last two decades, culture‐independent approaches …

Wine microbiome: a dynamic world of microbial interactions

Y Liu, S Rousseaux, R Tourdot-Maréchal… - Critical reviews in …, 2017 - Taylor & Francis
Most fermented products are generated by a mixture of microbes. These microbial consortia
perform various biological activities responsible for the nutritional, hygienic, and aromatic …

Metabolic model-based integration of microbiome taxonomic and metabolomic profiles elucidates mechanistic links between ecological and metabolic variation

C Noecker, A Eng, S Srinivasan, CM Theriot… - …, 2016 - Am Soc Microbiol
Multiple molecular assays now enable high-throughput profiling of the ecology, metabolic
capacity, and activity of the human microbiome. However, to date, analyses of such multi …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

Multi-omic meta-analysis identifies functional signatures of airway microbiome in chronic obstructive pulmonary disease

Z Wang, Y Yang, Z Yan, H Liu, B Chen… - The ISME …, 2020 - academic.oup.com
The interaction between airway microbiome and host in chronic obstructive pulmonary
disease (COPD) is poorly understood. Here we used a multi-omic meta-analysis approach …