[HTML][HTML] Progress and opportunities through use of genomics in animal production

HE Jones, PB Wilson - Trends in Genetics, 2022 - cell.com
The rearing of farmed animals is a vital component of global food production systems, but its
impact on the environment, human health, animal welfare, and biodiversity is being …

[HTML][HTML] Development of a high density 600K SNP genotyping array for chicken

A Kranis, AA Gheyas, C Boschiero, F Turner, L Yu… - BMC genomics, 2013 - Springer
Abstract Background High density (HD) SNP genotyping arrays are an important tool for
genetic analyses of animals and plants. Although the chicken is one of the most important …

[HTML][HTML] A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array

S Unterseer, E Bauer, G Haberer, M Seidel, C Knaak… - BMC genomics, 2014 - Springer
Background High density genotyping data are indispensable for genomic analyses of
complex traits in animal and crop species. Maize is one of the most important crop plants …

[HTML][HTML] Genome-wide association study for feed efficiency and growth traits in US beef cattle

CM Seabury, DL Oldeschulte, M Saatchi, JE Beever… - BMC genomics, 2017 - Springer
Background Single nucleotide polymorphism (SNP) arrays for domestic cattle have
catalyzed the identification of genetic markers associated with complex traits for inclusion in …

[HTML][HTML] Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut

MK Pandey, G Agarwal, SM Kale, J Clevenger… - Scientific Reports, 2017 - nature.com
Single nucleotide polymorphisms (SNPs) are the most abundant DNA sequence variation in
the genomes which can be used to associate genotypic variation to the phenotype …

[HTML][HTML] Genomic imputation and evaluation using high-density Holstein genotypes

PM VanRaden, DJ Null, M Sargolzaei… - Journal of dairy …, 2013 - Elsevier
Genomic evaluations for 161,341 Holsteins were computed by using 311,725 of 777,962
markers on the Illumina BovineHD Genotyping BeadChip (HD). Initial edits with 1,741 HD …

Copy number variation in the cattle genome

GE Liu, DM Bickhart - Functional & integrative genomics, 2012 - Springer
Copy number variations (CNVs) are gains and losses of genomic sequence greater than 50
bp between two individuals of a species. While single nucleotide polymorphisms (SNPs) are …

[HTML][HTML] Genome-wide association and genotype by environment interactions for growth traits in US Red Angus cattle

JL Smith, ML Wilson, SM Nilson, TN Rowan… - BMC genomics, 2022 - Springer
Background Genotypic information produced from single nucleotide polymorphism (SNP)
arrays has routinely been used to identify genomic regions associated with complex traits in …

[HTML][HTML] Developing a 670k genotyping array to tag~ 2M SNPs across 24 horse breeds

RJ Schaefer, M Schubert, E Bailey, DL Bannasch… - BMC genomics, 2017 - Springer
Background To date, genome-scale analyses in the domestic horse have been limited by
suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of …

Genome scan for meat quality traits in Nelore beef cattle

PC Tizioto, JE Decker, JF Taylor… - Physiological …, 2013 - journals.physiology.org
Meat quality traits are economically important because they affect consumers' acceptance,
which, in turn, influences the demand for beef. However, selection to improve meat quality is …