Recent progress towards chemically-specific coarse-grained simulation models with consistent dynamical properties
JF Rudzinski - Computation, 2019 - mdpi.com
Coarse-grained (CG) models can provide computationally efficient and conceptually simple
characterizations of soft matter systems. While generic models probe the underlying physics …
characterizations of soft matter systems. While generic models probe the underlying physics …
From adaptive resolution to molecular dynamics of open systems
We provide an overview of the Adaptive Resolution Simulation method (AdResS) based on
discussing its basic principles and presenting its current numerical and theoretical …
discussing its basic principles and presenting its current numerical and theoretical …
M2 macrophage-derived extracellular vesicles promote gastric cancer progression via a microRNA-130b-3p/MLL3/GRHL2 signaling cascade
Y Zhang, W Meng, P Yue, X Li - Journal of Experimental & Clinical Cancer …, 2020 - Springer
Background Transfer of noncoding microRNAs (miRNAs) by extracellular vesicles (EVs)
promotes the development of chemoresistance in many tumor types. Additionally, restoration …
promotes the development of chemoresistance in many tumor types. Additionally, restoration …
Molecular simulation of liquid crystals
MP Allen - Molecular Physics, 2019 - Taylor & Francis
This article reviews recent progress in the computer simulation of liquid crystals at the
molecular level. It covers the use of simple rigid-body models of the constituent molecules …
molecular level. It covers the use of simple rigid-body models of the constituent molecules …
Functional macromolecular systems: Kinetic pathways to obtain tailored structures
This article aims to stimulate research on non‐equilibrium macromolecular systems, as
nowadays a large toolbox to synthesize tailored macromolecules is available. A large variety …
nowadays a large toolbox to synthesize tailored macromolecules is available. A large variety …
Dynamical properties across different coarse-grained models for ionic liquids
JF Rudzinski, S Kloth, S Wörner, T Pal… - Journal of Physics …, 2021 - iopscience.iop.org
Room-temperature ionic liquids (RTILs) stand out among molecular liquids for their rich
physicochemical characteristics, including structural and dynamic heterogeneity. The …
physicochemical characteristics, including structural and dynamic heterogeneity. The …
Coarse-grained model incorporating short-and long-range effective potentials for the fast simulation of micelle formation in solutions of ionic surfactants
SD Peroukidis, IP Stott… - The Journal of Physical …, 2022 - ACS Publications
A coarse-grained model comprising short-and long-range effective potentials, parametrized
with the iterative Boltzmann inversion (IBI) method, is presented for capturing micelle …
with the iterative Boltzmann inversion (IBI) method, is presented for capturing micelle …
Application of the 2PT model to understanding entropy change in molecular coarse-graining
MP Bernhardt, M Dallavalle, NFA Van der Vegt - Soft Materials, 2020 - Taylor & Francis
The effects of coarse-graining on the thermodynamic properties of molecular liquids are
studied by computing the standard molar entropies of chloroform, 1, 4-dioxane and …
studied by computing the standard molar entropies of chloroform, 1, 4-dioxane and …
[HTML][HTML] Development of Iterative Methods for Coarse-Graining Molecular Liquids
MP Bernhardt - tuprints.ulb.tu-darmstadt.de
The enormous number of atoms in biological and macromolecular systems can prohibit the
direct application of atomistic molecular dynamics (MD) simulations. This limitation motivates …
direct application of atomistic molecular dynamics (MD) simulations. This limitation motivates …