Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective
Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern
medicine. Effective prevention strategies are urgently required to slow the emergence and …
medicine. Effective prevention strategies are urgently required to slow the emergence and …
Diffusion models in bioinformatics and computational biology
Denoising diffusion models embody a type of generative artificial intelligence that can be
applied in computer vision, natural language processing and bioinformatics. In this Review …
applied in computer vision, natural language processing and bioinformatics. In this Review …
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
Enzyme turnover numbers (k cat) are key to understanding cellular metabolism, proteome
allocation and physiological diversity, but experimentally measured k cat data are sparse …
allocation and physiological diversity, but experimentally measured k cat data are sparse …
Controlling gene expression with deep generative design of regulatory DNA
Abstract Design of de novo synthetic regulatory DNA is a promising avenue to control gene
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
expression in biotechnology and medicine. Using mutagenesis typically requires screening …
A review of deep learning applications in human genomics using next-generation sequencing data
WS Alharbi, M Rashid - Human Genomics, 2022 - Springer
Genomics is advancing towards data-driven science. Through the advent of high-throughput
data generating technologies in human genomics, we are overwhelmed with the heap of …
data generating technologies in human genomics, we are overwhelmed with the heap of …
Computational scoring and experimental evaluation of enzymes generated by neural networks
In recent years, generative protein sequence models have been developed to sample novel
sequences. However, predicting whether generated proteins will fold and function remains …
sequences. However, predicting whether generated proteins will fold and function remains …
Enabling technology and core theory of synthetic biology
Synthetic biology provides a new paradigm for life science research (“build to learn”) and
opens the future journey of biotechnology (“build to use”). Here, we discuss advances of …
opens the future journey of biotechnology (“build to use”). Here, we discuss advances of …
[HTML][HTML] Machine learning in clinical decision making
Machine learning is increasingly integrated into clinical practice, with applications ranging
from pre-clinical data processing, bedside diagnosis assistance, patient stratification …
from pre-clinical data processing, bedside diagnosis assistance, patient stratification …
A foundational large language model for edible plant genomes
J Mendoza-Revilla, E Trop, L Gonzalez… - Communications …, 2024 - nature.com
Significant progress has been made in the field of plant genomics, as demonstrated by the
increased use of high-throughput methodologies that enable the characterization of multiple …
increased use of high-throughput methodologies that enable the characterization of multiple …
Designing artificial synthetic promoters for accurate, smart, and versatile gene expression in plants
E Yasmeen, J Wang, M Riaz, L Zhang, K Zuo - Plant Communications, 2023 - cell.com
With the development of high-throughput biology techniques and artificial intelligence, it has
become increasingly feasible to design and construct artificial biological parts, modules …
become increasingly feasible to design and construct artificial biological parts, modules …