Artificial intelligence and machine learning in cancer imaging
An increasing array of tools is being developed using artificial intelligence (AI) and machine
learning (ML) for cancer imaging. The development of an optimal tool requires …
learning (ML) for cancer imaging. The development of an optimal tool requires …
Containers for computational reproducibility
The fast-paced development of computational tools has enabled tremendous scientific
progress in recent years. However, this rapid surge of technological capability also comes at …
progress in recent years. However, this rapid surge of technological capability also comes at …
Nextflow enables reproducible computational workflows
P Di Tommaso, M Chatzou, EW Floden, PP Barja… - Nature …, 2017 - nature.com
The increasing complexity of readouts for omics analyses goes hand-in-hand with concerns
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
about the reproducibility of experiments that analyze'big data'1, 2, 3. When analyzing very …
[HTML][HTML] Translating RNA sequencing into clinical diagnostics: opportunities and challenges
SA Byron, KR Van Keuren-Jensen… - Nature Reviews …, 2016 - nature.com
With the emergence of RNA sequencing (RNA-seq) technologies, RNA-based biomolecules
hold expanded promise for their diagnostic, prognostic and therapeutic applicability in …
hold expanded promise for their diagnostic, prognostic and therapeutic applicability in …
[图书][B] Reproducibility and replicability in science
National Academies of Sciences, Policy, Global Affairs… - 2019 - books.google.com
One of the pathways by which the scientific community confirms the validity of a new
scientific discovery is by repeating the research that produced it. When a scientific effort fails …
scientific discovery is by repeating the research that produced it. When a scientific effort fails …
BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods
The rate of progress in human neurosciences is limited by the inability to easily apply a wide
range of analysis methods to the plethora of different datasets acquired in labs around the …
range of analysis methods to the plethora of different datasets acquired in labs around the …
A comparative study of containers and virtual machines in big data environment
Container technique is gaining increasing attention in recent years and has become an
alternative to traditional virtual machines. Some of the primary motivations for the enterprise …
alternative to traditional virtual machines. Some of the primary motivations for the enterprise …
Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
SST Mak, S Gopalakrishnan, C Carøe, C Geng… - …, 2017 - academic.oup.com
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …
sequencing platforms. Although a number of such platforms have been applied to ancient …
The ocean sampling day consortium
A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
Existing workflows for the analysis of multi-omic microbiome datasets are lab-specific and
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …
often result in sub-optimal data usage. Here we present IMP, a reproducible and modular …