[HTML][HTML] Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi

S Paloi, JJ Luangsa-Ard, W Mhuantong, M Stadler… - Fungal Biology …, 2022 - Elsevier
Intragenomic variation is the molecular variation within the genome among repetitive DNA.
As a multigene family, nuclear ribosomal DNA (rDNA) has been widely used in fungal …

Organellar introns in fungi, algae, and plants

J Mukhopadhyay, G Hausner - Cells, 2021 - mdpi.com
Introns are ubiquitous in eukaryotic genomes and have long been considered as 'junk
RNA'but the huge energy expenditure in their transcription, removal, and degradation …

Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA

EJ Vainio, J Hantula - Mycological research, 2000 - Elsevier
Four different primer pairs were designed for the preferential PCR amplification of fungal
SSU rDNA directly from environmental samples. Most of the amplification products obtained …

[图书][B] Molecular detection of human bacterial pathogens

D Liu - 2011 - books.google.com
As more original molecular protocols and subsequent modifications are described in the
literature, it has become difficult for those not directly involved in the development of these …

DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context

LJ Kelly, PM Hollingsworth, BJ Coppins… - New …, 2011 - Wiley Online Library
Efforts are currently underway to establish a standard DNA barcode region for fungi; we
tested the utility of the internal transcribed spacer (ITS) of nuclear ribosomal DNA for DNA …

Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi.

DS Hibbett - Molecular Biology and Evolution, 1996 - academic.oup.com
Group I introns were discovered inserted at the same position in the nuclear small-subunit
ribosomal DNA (nuc-ssu-rDNA) in several species of homobasidiomycetes (mushroom …

Phylogenetic comparison of protein-coding versus ribosomal RNA-coding sequence data: a case study of the Lecanoromycetes (Ascomycota)

V Hofstetter, J Miadlikowska, F Kauff… - Molecular phylogenetics …, 2007 - Elsevier
The resolving power and statistical support provided by two protein-coding (RPB1 and
RPB2) and three ribosomal RNA-coding (nucSSU, nucLSU, and mitSSU) genes individually …

Genetic variation within and among populations of the threatened lichen Lobaria pulmonaria in Switzerland and implications for its conservation

S Zoller, F Lutzoni, C Scheidegger - Molecular Ecology, 1999 - Wiley Online Library
The foliose epiphytic lichen Lobaria pulmonaria has suffered a significant decline in
European lowlands during the last decades and therefore is considered as endangered …

A nomenclature for fungal PCR primers with examples from intron-containing SSU rDNA

A Gargas, PT DePriest - Mycologia, 1996 - Taylor & Francis
We present a compilation of polymerase chain reaction primers (oligonucleotides) used to
amplify and sequence the small subunit of nuclear ribosomal DNA. To simplify use of these …

Molecular approaches and the concept of species and species complexes in lichenized fungi

M Grube, S Kroken - Mycological Research, 2000 - cambridge.org
The concept of species and species complexes of lichenized fungi is reviewed in the light of
recent molecular approaches. Species concepts based on chemistry, morphology …