Knowledge-graph-enabled biomedical entity linking: a survey

J Shi, Z Yuan, W Guo, C Ma, J Chen, M Zhang - World Wide Web, 2023 - Springer
Abstract Biomedical Entity Linking (BM-EL) task, which aims to match biomedical mentions
in articles to entities in a certain knowledge base (eg, the Unified Medical Language …

Taxonomy enrichment with text and graph vector representations

I Nikishina, M Tikhomirov, V Logacheva… - Semantic …, 2022 - content.iospress.com
Abstract Knowledge graphs such as DBpedia, Freebase or Wikidata always contain a
taxonomic backbone that allows the arrangement and structuring of various concepts in …

KenMeSH: Knowledge-enhanced end-to-end biomedical text labelling

X Wang, RE Mercer, F Rudzicz - arXiv preprint arXiv:2203.06835, 2022 - arxiv.org
Currently, Medical Subject Headings (MeSH) are manually assigned to every biomedical
article published and subsequently recorded in the PubMed database to facilitate retrieving …

Graphprompt: Biomedical entity normalization using graph-based prompt templates

J Zhang, Z Wang, S Zhang, MM Bhalerao, Y Liu, D Zhu… - bioRxiv, 2021 - biorxiv.org
Biomedical entity normalization unifies the language across biomedical experiments and
studies, and further enables us to obtain a holistic view of life sciences. Current approaches …

GraphPrompt: Graph-based prompt templates for biomedical synonym prediction

H Xu, J Zhang, Z Wang, S Zhang, M Bhalerao… - Proceedings of the …, 2023 - ojs.aaai.org
In the expansion of biomedical dataset, the same category may be labeled with different
terms, thus being tedious and onerous to curate these terms. Therefore, automatically …

Learning Dynamic Coherence with Graph Attention Network for Biomedical Entity Linking

M Bo, M Zhang - … Joint Conference on Neural Networks (IJCNN …, 2021 - ieeexplore.ieee.org
Biomedical entity linking, which aligns various disease mentions in unstructured documents
to their corresponding standardized entities in a knowledge base (KB), is an essential task in …

Simple Data Augmentation Techniques for Chinese Disease Normalization

W Cui, X Fu, S Liu, M Gu, X Liu, J Wu, I King - arXiv preprint arXiv …, 2023 - arxiv.org
Disease name normalization is an important task in the medical domain. It classifies disease
names written in various formats into standardized names, serving as a fundamental …

Study of Named Entity Recognition Based on Graph Neural Network.

SHU Wenhao, XI Xuefeng… - Journal of …, 2023 - search.ebscohost.com
Named entity recognition is one of the pre-processing tasks in natural language processing,
aiming at identifying desired entities and types from unstructured text, and is used in many …

Evaluation of taxonomy enrichment on diachronic wordnet versions

I Nikishina, N Loukachevitch… - Proceedings of the …, 2021 - aclanthology.org
The vast majority of the existing approaches for taxonomy enrichment apply word
embeddings as they have proven to accumulate contexts (in a broad sense) extracted from …

[PDF][PDF] Exploring graph-based representations for taxonomy enrichment

I Nikishina, N Loukachevitch… - Proceedings of the …, 2021 - aclanthology.org
The vast majority of the existing approaches for taxonomy enrichment apply word
embeddings as they have proven to accumulate contexts (in a broad sense) extracted from …