Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory

DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …

[HTML][HTML] The use of bacteriophages to biocontrol oral biofilms

SP Szafrański, A Winkel, M Stiesch - Journal of biotechnology, 2017 - Elsevier
Infections induced by oral biofilms include caries, as well as periodontal, and peri-implant
disease, and may influence quality of life, systemic health, and expenditure. As bacterial …

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

S Yachida, S Mizutani, H Shiroma, S Shiba… - Nature medicine, 2019 - nature.com
In most cases of sporadic colorectal cancers, tumorigenesis is a multistep process, involving
genomic alterations in parallel with morphologic changes. In addition, accumulating …

Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity

L Chen, V Collij, M Jaeger… - Nature …, 2020 - nature.com
The gut microbiome is an ecosystem that involves complex interactions. Currently, our
knowledge about the role of the gut microbiome in health and disease relies mainly on …

Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies

M Tramontano, S Andrejev, M Pruteanu… - Nature …, 2018 - nature.com
Bacterial metabolism plays a fundamental role in gut microbiota ecology and host–
microbiome interactions. Yet the metabolic capabilities of most gut bacteria have remained …

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults

R Xu, R Lu, T Zhang, Q Wu, W Cai, X Han… - Communications …, 2021 - nature.com
SARS-CoV-2 is the cause of COVID-19. It infects multiple organs including the respiratory
tract and gut. Dynamic changes of regional microbiomes in infected adults are largely …

Episymbiotic Saccharibacteria suppresses gingival inflammation and bone loss in mice through host bacterial modulation

O Chipashvili, DR Utter, JK Bedree, Y Ma, F Schulte… - Cell host & …, 2021 - cell.com
Saccharibacteria (TM7) are obligate epibionts living on the surface of their host bacteria and
are strongly correlated with dysbiotic microbiomes during periodontitis and other …

The microbiological landscape of anaerobic infections in hidradenitis suppurativa: a prospective metagenomic study

H Guet-Revillet, JP Jais, MN Ungeheuer… - Clinical Infectious …, 2017 - academic.oup.com
Background. Hidradenitis suppurativa (HS) is a frequent and severe disease of the skin,
characterized by recurrent or chronic skinfold suppurative lesions with a high impact on …

[HTML][HTML] The diagnosis and management of pulmonary actinomycosis

M Boot, J Archer, I Ali - Journal of Infection and Public Health, 2023 - Elsevier
Pulmonary actinomycosis is a rare infection caused by the bacterial species actinomyces.
This paper aims to provide a comprehensive review of pulmonary actinomycosis to improve …

Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting

Y Liu, G Meric, AS Havulinna, SM Teo, F Åberg… - Cell Metabolism, 2022 - cell.com
The gut microbiome has shown promise as a predictive biomarker for various diseases.
However, the potential of gut microbiota for prospective risk prediction of liver disease has …