History and future perspectives on the discipline of quantitative systems pharmacology modeling and its applications

K Azer, CD Kaddi, JS Barrett, JPF Bai… - Frontiers in …, 2021 - frontiersin.org
Mathematical biology and pharmacology models have a long and rich history in the fields of
medicine and physiology, impacting our understanding of disease mechanisms and the …

Promising stem cell therapy in the management of HIV and AIDS: A narrative review

UR Kandula, AD Wake - Biologics: Targets and Therapy, 2022 - Taylor & Francis
Stem cell therapies are becoming a major topic in biomedical research all over the planet. It
may be a viable treatment choice for people suffering from a wide range of illnesses and …

The spectrum of mechanism-oriented models and methods for explanations of biological phenomena

CA Hunt, A Erdemir, WW Lytton, F Mac Gabhann… - Processes, 2018 - mdpi.com
Developing and improving mechanism-oriented computational models to better explain
biological phenomena is a dynamic and expanding frontier. As the complexity of targeted …

A quantitative systems pharmacology model of Gaucher disease type 1 provides mechanistic insight into the response to substrate reduction therapy with eliglustat

R Abrams, CD Kaddi, M Tao, RJ Leiser… - CPT …, 2020 - Wiley Online Library
Gaucher's disease type 1 (GD1) leads to significant morbidity and mortality through clinical
manifestations, such as splenomegaly, hematological complications, and bone disease …

Linear-in-flux-expressions methodology: toward a robust mathematical framework for quantitative systems pharmacology simulators

ST McQuade, RE Abrams, JS Barrett… - Gene regulation …, 2017 - journals.sagepub.com
Quantitative Systems Pharmacology (QSP) modeling is increasingly used as a quantitative
tool for advancing mechanistic hypotheses on the mechanism of action of a drug, and its …

[PDF][PDF] Equilibria and control of metabolic networks with enhancers and inhibitors

Z An, NJ Merrill, ST McQuade… - Mathematics in …, 2019 - scholarship.libraries.rutgers.edu
Linear-In-Flux-Expressions (briefly LIFE) methodology models metabolism by using
correlations among fluxes of metabolic networks and reducing the number of model …

Equilibria for large metabolic systems and the LIFE approach

ST McQuade, Z An, NJ Merrill… - 2018 Annual …, 2018 - ieeexplore.ieee.org
In a recent paper [9] the authors introduced a new methodology for the simulation and
control of large metabolic systems called LIFE (Linear-in-Flux-Expressions). In many …

Population modeling by examples III

Population Modeling Working Group - Proceedings of the Summer …, 2017 - dl.acm.org
This review paper contains examples of population modeling that were collected through
self introductions sent to the population modeling mailing list. It is the third review this group …

Linear-in-flux-expression (LIFE) approach to dynamic biological networks

NJ Merrill - 2020 - rucore.libraries.rutgers.edu
Biological systems are inherently dynamic. Examples of dynamic networks are 1.)
interactions of metabolites in metabolic networks, 2.) cycling and entrainment of biological …

Modeling bio-networks at multiple scales

ST McQuade - 2019 - rucore.libraries.rutgers.edu
Biological phenomena at different scales such as 1. The metabolism of an organism (the
nano scale), 2. Cell proliferation and differentiation (the micro scale), and 3. Selective local …