Sex determination, gonadal sex differentiation, and plasticity in vertebrate species
Y Nagahama, T Chakraborty… - Physiological …, 2021 - journals.physiology.org
A diverse array of sex determination (SD) mechanisms, encompassing environmental to
genetic, have been found to exist among vertebrates, covering a spectrum from fixed SD …
genetic, have been found to exist among vertebrates, covering a spectrum from fixed SD …
New approaches for genome assembly and scaffolding
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …
assembly over the past decade. Genome assemblies from high-throughput, short-read …
[HTML][HTML] Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
S Reyes-Chin-Wo, Z Wang, X Yang, A Kozik… - Nature …, 2017 - nature.com
Lettuce (Lactuca sativa) is a major crop and a member of the large, highly successful
Compositae family of flowering plants. Here we present a reference assembly for the …
Compositae family of flowering plants. Here we present a reference assembly for the …
The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes
Here we use a chromosome-level genome assembly of a prairie rattlesnake (Crotalus
viridis), together with Hi-C, RNA-seq, and whole-genome resequencing data, to study key …
viridis), together with Hi-C, RNA-seq, and whole-genome resequencing data, to study key …
New advances in sequence assembly
AM Phillippy - Genome research, 2017 - genome.cshlp.org
“With modern fast sequencing techniques and suitable computer programs it is now possible
to sequence whole genomes without the need of restriction maps.”“If the 5′ end of the …
to sequence whole genomes without the need of restriction maps.”“If the 5′ end of the …
A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
Emu and other ratites are more informative than any other birds in reconstructing the
evolution of the ancestral avian or vertebrate karyotype because of their much slower rate of …
evolution of the ancestral avian or vertebrate karyotype because of their much slower rate of …
Effects of global warming on species with temperature‐dependent sex determination: Bridging the gap between empirical research and management
EC Lockley, C Eizaguirre - Evolutionary Applications, 2021 - Wiley Online Library
Global warming could threaten over 400 species with temperature‐dependent sex
determination (TSD) worldwide, including all species of sea turtle. During embryonic …
determination (TSD) worldwide, including all species of sea turtle. During embryonic …
Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary
Researchers have assembled thousands of eukaryotic genomes using Illumina reads, but
traditional mate‐pair libraries cannot span all repetitive elements, resulting in highly …
traditional mate‐pair libraries cannot span all repetitive elements, resulting in highly …
Consequence of paradigm shift with repeat landscapes in reptiles: Powerful facilitators of chromosomal rearrangements for diversity and evolution
Reptiles are notable for the extensive genomic diversity and species richness among
amniote classes, but there is nevertheless a need for detailed genome-scale studies …
amniote classes, but there is nevertheless a need for detailed genome-scale studies …
Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution
S Lamichhaney, DC Card… - … of the Royal …, 2019 - royalsocietypublishing.org
Evolutionary convergence has been long considered primary evidence of adaptation driven
by natural selection and provides opportunities to explore evolutionary repeatability and …
by natural selection and provides opportunities to explore evolutionary repeatability and …