Sex determination, gonadal sex differentiation, and plasticity in vertebrate species

Y Nagahama, T Chakraborty… - Physiological …, 2021 - journals.physiology.org
A diverse array of sex determination (SD) mechanisms, encompassing environmental to
genetic, have been found to exist among vertebrates, covering a spectrum from fixed SD …

New approaches for genome assembly and scaffolding

ES Rice, RE Green - Annual review of animal biosciences, 2019 - annualreviews.org
Affordable, high-throughput DNA sequencing has accelerated the pace of genome
assembly over the past decade. Genome assemblies from high-throughput, short-read …

[HTML][HTML] Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce

S Reyes-Chin-Wo, Z Wang, X Yang, A Kozik… - Nature …, 2017 - nature.com
Lettuce (Lactuca sativa) is a major crop and a member of the large, highly successful
Compositae family of flowering plants. Here we present a reference assembly for the …

The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes

DR Schield, DC Card, NR Hales, BW Perry… - Genome …, 2019 - genome.cshlp.org
Here we use a chromosome-level genome assembly of a prairie rattlesnake (Crotalus
viridis), together with Hi-C, RNA-seq, and whole-genome resequencing data, to study key …

New advances in sequence assembly

AM Phillippy - Genome research, 2017 - genome.cshlp.org
“With modern fast sequencing techniques and suitable computer programs it is now possible
to sequence whole genomes without the need of restriction maps.”“If the 5′ end of the …

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

J Liu, Z Wang, J Li, L Xu, J Liu, S Feng, C Guo… - Genome …, 2021 - genome.cshlp.org
Emu and other ratites are more informative than any other birds in reconstructing the
evolution of the ancestral avian or vertebrate karyotype because of their much slower rate of …

Effects of global warming on species with temperature‐dependent sex determination: Bridging the gap between empirical research and management

EC Lockley, C Eizaguirre - Evolutionary Applications, 2021 - Wiley Online Library
Global warming could threaten over 400 species with temperature‐dependent sex
determination (TSD) worldwide, including all species of sea turtle. During embryonic …

Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary

JP Elbers, MF Rogers, PL Perelman… - Molecular Ecology …, 2019 - Wiley Online Library
Researchers have assembled thousands of eukaryotic genomes using Illumina reads, but
traditional mate‐pair libraries cannot span all repetitive elements, resulting in highly …

Consequence of paradigm shift with repeat landscapes in reptiles: Powerful facilitators of chromosomal rearrangements for diversity and evolution

SF Ahmad, W Singchat, M Jehangir, T Panthum… - Genes, 2020 - mdpi.com
Reptiles are notable for the extensive genomic diversity and species richness among
amniote classes, but there is nevertheless a need for detailed genome-scale studies …

Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution

S Lamichhaney, DC Card… - … of the Royal …, 2019 - royalsocietypublishing.org
Evolutionary convergence has been long considered primary evidence of adaptation driven
by natural selection and provides opportunities to explore evolutionary repeatability and …