Graph representation learning in biomedicine and healthcare

MM Li, K Huang, M Zitnik - Nature Biomedical Engineering, 2022 - nature.com
Networks—or graphs—are universal descriptors of systems of interacting elements. In
biomedicine and healthcare, they can represent, for example, molecular interactions …

Towards electronic health record-based medical knowledge graph construction, completion, and applications: A literature study

L Murali, G Gopakumar, DM Viswanathan… - Journal of biomedical …, 2023 - Elsevier
With the growth of data and intelligent technologies, the healthcare sector opened numerous
technology that enabled services for patients, clinicians, and researchers. One major hurdle …

Building a knowledge graph to enable precision medicine

P Chandak, K Huang, M Zitnik - Scientific Data, 2023 - nature.com
Developing personalized diagnostic strategies and targeted treatments requires a deep
understanding of disease biology and the ability to dissect the relationship between …

From real-world electronic health record data to real-world results using artificial intelligence

R Knevel, KP Liao - Annals of the Rheumatic Diseases, 2023 - ard.bmj.com
With the worldwide digitalisation of medical records, electronic health records (EHRs) have
become an increasingly important source of real-world data (RWD). RWD can complement …

Big data and artificial intelligence in cancer research

X Wu, W Li, H Tu - Trends in cancer, 2024 - cell.com
The field of oncology has witnessed an extraordinary surge in the application of big data and
artificial intelligence (AI). AI development has made multiscale and multimodal data fusion …

The Mass General Brigham Biobank Portal: an i2b2-based data repository linking disparate and high-dimensional patient data to support multimodal analytics

VM Castro, V Gainer, N Wattanasin… - Journal of the …, 2022 - academic.oup.com
Objective Integrating and harmonizing disparate patient data sources into one consolidated
data portal enables researchers to conduct analysis efficiently and effectively. Materials and …

Multiview Incomplete Knowledge Graph Integration with application to cross-institutional EHR data harmonization

D Zhou, Z Gan, X Shi, A Patwari, E Rush… - Journal of Biomedical …, 2022 - Elsevier
Objective: The growing availability of electronic health records (EHR) data opens
opportunities for integrative analysis of multi-institutional EHR to produce generalizable …

[HTML][HTML] Multimodal learning on graphs for disease relation extraction

Y Lin, K Lu, S Yu, T Cai, M Zitnik - Journal of Biomedical Informatics, 2023 - Elsevier
Disease knowledge graphs have emerged as a powerful tool for artificial intelligence to
connect, organize, and access diverse information about diseases. Relations between …

Multimodal representation learning for predicting molecule–disease relations

J Wen, X Zhang, E Rush, VA Panickan, X Li… - …, 2023 - academic.oup.com
Motivation Predicting molecule–disease indications and side effects is important for drug
development and pharmacovigilance. Comprehensively mining molecule–molecule …

Doubly robust augmented model accuracy transfer inference with high dimensional features

D Zhou, M Liu, M Li, T Cai - Journal of the American Statistical …, 2024 - Taylor & Francis
Transfer learning is crucial for training models that generalize to unlabeled target
populations using labeled source data, especially in real-world studies where label scarcity …