Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective

A Folkesson, L Jelsbak, L Yang, HK Johansen… - Nature Reviews …, 2012 - nature.com
The airways of patients with cystic fibrosis (CF) are nearly always infected with many
different microorganisms. This environment offers warm, humid and nutrient-rich conditions …

The distribution of fitness effects of new mutations

A Eyre-Walker, PD Keightley - Nature Reviews Genetics, 2007 - nature.com
The distribution of fitness effects (DFE) of new mutations is a fundamental entity in genetics
that has implications ranging from the genetic basis of complex disease to the stability of the …

The molecular diversity of adaptive convergence

O Tenaillon, A Rodríguez-Verdugo, RL Gaut… - Science, 2012 - science.org
To estimate the number and diversity of beneficial mutations, we experimentally evolved 115
populations of Escherichia coli to 42.2° C for 2000 generations and sequenced one genome …

Negative epistasis between beneficial mutations in an evolving bacterial population

AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper - Science, 2011 - science.org
Epistatic interactions between mutations play a prominent role in evolutionary theories.
Many studies have found that epistasis is widespread, but they have rarely considered …

Fitness and its role in evolutionary genetics

HA Orr - Nature Reviews Genetics, 2009 - nature.com
Although the operation of natural selection requires that genotypes differ in fitness, some
geneticists may find it easier to understand natural selection than fitness. Partly this reflects …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Capturing the mutational landscape of the beta-lactamase TEM-1

H Jacquier, A Birgy, H Le Nagard… - Proceedings of the …, 2013 - National Acad Sciences
Adaptation proceeds through the selection of mutations. The distribution of mutant fitness
effect and the forces shaping this distribution are therefore keys to predict the evolutionary …

The utility of Fisher's geometric model in evolutionary genetics

O Tenaillon - Annual review of ecology, evolution, and …, 2014 - annualreviews.org
The accumulation of data on the genomic bases of adaptation has triggered renewed
interest in theoretical models of adaptation. Among these models, Fisher's geometric model …

Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages

A Fulgione, C Neto, AF Elfarargi, E Tergemina… - Nature …, 2022 - nature.com
Understanding how populations adapt to abrupt environmental change is necessary to
predict responses to future challenges, but identifying specific adaptive variants, quantifying …

Hidden reaction norms, cryptic genetic variation, and evolvability

CD Schlichting - Annals of the new York Academy of Sciences, 2008 - Wiley Online Library
There is reason to suspect that hidden reaction norms (variation that is phenotypically
expressed only after changes in internal or external environmental conditions) may store an …