Modeling the current modulation of bundled dna structures in nanopores
We investigate the salt-dependent current modulation of bundled DNA nanostructures in a
nanopore. To this end, we developed four simulation models for a 2× 2 origami structure …
nanopore. To this end, we developed four simulation models for a 2× 2 origami structure …
A numerical investigation of analyte size effects in nanopore sensing systems
We investigate the ionic current modulation in DNA nanopore translocation setups by
numerically solving the electrokinetic mean-field equations for an idealized model …
numerically solving the electrokinetic mean-field equations for an idealized model …
Capture and translocation of a rod-like molecule by a nanopore: orientation, charge distribution and hydrodynamics
We investigate the translocation of rods with different charge distributions using hybrid
Langevin dynamics and lattice Boltzmann (LD–LB) simulations. Electrostatic interactions are …
Langevin dynamics and lattice Boltzmann (LD–LB) simulations. Electrostatic interactions are …
From the atomistic to the macromolecular scale: Distinct simulation approaches for polyelectrolyte solutions
Polyelectrolytes reveal interesting properties in solution. At short length scales, the
dissociation of counterions is heavily affected by the chemical structure of the …
dissociation of counterions is heavily affected by the chemical structure of the …
Modeling the current modulation of dsDNA in nanopores–from mean-field to atomistic and back
All-atom molecular dynamics (MD) simulations of double stranded DNA (dsDNA)
translocating through a cylindrical nanopore by Kesselheim et al.[Phys. Rev. Lett. 112 …
translocating through a cylindrical nanopore by Kesselheim et al.[Phys. Rev. Lett. 112 …