Transcriptome analysis based on RNA-Seq in understanding pathogenic mechanisms of diseases and the immune system of fish: a comprehensive review

A Sudhagar, G Kumar, M El-Matbouli - International journal of molecular …, 2018 - mdpi.com
In recent years, with the advent of next-generation sequencing along with the development
of various bioinformatics tools, RNA sequencing (RNA-Seq)-based transcriptome analysis …

Transcriptional stress responses to environmental and husbandry stressors in aquaculture species

N Eissa, HP Wang - Reviews in Aquaculture, 2016 - Wiley Online Library
Stress of aquatic animals occurs due to physical and physiological disturbances in the
aquatic environment or system when transportation, crowding, handling or changes of …

Zebrafish as animal model for aquaculture nutrition research

PE Ulloa, JF Medrano, CG Feijoo - Frontiers in genetics, 2014 - frontiersin.org
The aquaculture industry continues to promote the diversification of ingredients used in
aquafeed in order to achieve a more sustainable aquaculture production system. The …

PacBio Iso-Seq improves the rainbow trout genome annotation and identifies alternative splicing associated with economically important phenotypes

A Ali, GH Thorgaard, M Salem - Frontiers in Genetics, 2021 - frontiersin.org
Rainbow trout is an important model organism that has received concerted international
efforts to study the transcriptome. For this purpose, short-read sequencing has been …

Aquaculture omics: An update on the current status of research and data analysis

JK Sundaray, S Dixit, A Rather, KD Rasal, L Sahoo - Marine Genomics, 2022 - Elsevier
Aquaculture is the fast-growing agricultural sector and has the ability to meet the growing
demand for protein nutritional security for future population. In future aquaculture is going to …

Detection and validation of QTL affecting bacterial cold water disease resistance in rainbow trout using restriction-site associated DNA sequencing

Y Palti, RL Vallejo, G Gao, S Liu, AG Hernandez… - PloS one, 2015 - journals.plos.org
Bacterial cold water disease (BCWD) causes significant economic loss in salmonid
aquaculture. Using microsatellite markers in a genome scan, we previously detected …

Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia

JH Xia, HL Li, BJ Li, XH Gu, HR Lin - Gene, 2018 - Elsevier
Hypoxia is one of the critical environmental stressors for fish in aquatic environments.
Although accumulating evidences indicate that gene expression is regulated by hypoxia …

Chronic stress inhibits growth and induces proteolytic mechanisms through two different nonoverlapping pathways in the skeletal muscle of a teleost fish

CA Valenzuela, R Zuloaga… - American Journal …, 2018 - journals.physiology.org
Chronic stress detrimentally affects animal health and homeostasis, with somatic growth,
and thus skeletal muscle, being particularly affected. A detailed understanding of the …

Concurrent changes in thermal tolerance thresholds and cellular heat stress response reveals novel molecular signatures and markers of high temperature …

A Pandey, M Rajesh, P Baral, D Sarma… - Journal of Thermal …, 2021 - Elsevier
The objective of this study was to better understand the molecular mechanisms which
regulate acclimatory responses and thermal safety margins of rainbow trout (Oncorhynchus …

Consequences of catch-and-release angling on the physiology, behaviour and survival of wild steelhead Oncorhynchus mykiss in the Bulkley River, British Columbia

WM Twardek, TO Gagne, LK Elmer, SJ Cooke… - Fisheries …, 2018 - Elsevier
Steelhead, the anadromous form of rainbow trout (Oncorhynchus mykiss), is one of the most
coveted recreationally targeted salmonids worldwide, and catch-and-release (C&R) is …