Fundamentals and methods for T‐and B‐cell epitope prediction
JL Sanchez-Trincado… - Journal of …, 2017 - Wiley Online Library
Adaptive immunity is mediated by T‐and B‐cells, which are immune cells capable of
developing pathogen‐specific memory that confers immunological protection. Memory and …
developing pathogen‐specific memory that confers immunological protection. Memory and …
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies
Although the therapeutic efficacy and commercial success of monoclonal antibodies (mAbs)
are tremendous, the design and discovery of new candidates remain a time and cost …
are tremendous, the design and discovery of new candidates remain a time and cost …
[HTML][HTML] An overview of bioinformatics tools for epitope prediction: implications on vaccine development
RE Soria-Guerra, R Nieto-Gomez… - Journal of biomedical …, 2015 - Elsevier
Exploitation of recombinant DNA and sequencing technologies has led to a new concept in
vaccination in which isolated epitopes, capable of stimulating a specific immune response …
vaccination in which isolated epitopes, capable of stimulating a specific immune response …
The structural basis of antibody-antigen recognition
I Sela-Culang, V Kunik, Y Ofran - Frontiers in immunology, 2013 - frontiersin.org
The function of antibodies (Abs) involves specific binding to antigens (Ags) and activation of
other components of the immune system to fight pathogens. The six hypervariable loops …
other components of the immune system to fight pathogens. The six hypervariable loops …
Computational approaches to therapeutic antibody design: established methods and emerging trends
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
Antibody-antigen binding relies on the specific interaction of amino acids at the paratope-
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
ElliPro: a new structure-based tool for the prediction of antibody epitopes
J Ponomarenko, HH Bui, W Li, N Fusseder… - BMC …, 2008 - Springer
Background Reliable prediction of antibody, or B-cell, epitopes remains challenging yet
highly desirable for the design of vaccines and immunodiagnostics. A correlation between …
highly desirable for the design of vaccines and immunodiagnostics. A correlation between …
Predicting linear B‐cell epitopes using string kernels
Y EL‐Manzalawy, D Dobbs… - Journal of Molecular …, 2008 - Wiley Online Library
The identification and characterization of B‐cell epitopes play an important role in vaccine
design, immunodiagnostic tests, and antibody production. Therefore, computational tools for …
design, immunodiagnostic tests, and antibody production. Therefore, computational tools for …
High-throughput prediction of protein antigenicity using protein microarray data
Motivation: Discovery of novel protective antigens is fundamental to the development of
vaccines for existing and emerging pathogens. Most computational methods for predicting …
vaccines for existing and emerging pathogens. Most computational methods for predicting …
Machine learning techniques for the prediction of B-cell and T-cell epitopes as potential vaccine targets with a specific focus on SARS-CoV-2 pathogen: A review
SNH Bukhari, A Jain, E Haq, A Mehbodniya, J Webber - Pathogens, 2022 - mdpi.com
The only part of an antigen (a protein molecule found on the surface of a pathogen) that is
composed of epitopes specific to T and B cells is recognized by the human immune system …
composed of epitopes specific to T and B cells is recognized by the human immune system …