[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing

DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …

[PDF][PDF] An improved corpus of disease mentions in PubMed citations

RI Dogan, Z Lu - BioNLP: Proceedings of the 2012 Workshop on …, 2012 - aclanthology.org
The latest discoveries on diseases and their diagnosis/treatment are mostly disseminated in
the form of scientific publications. However, with the rapid growth of the biomedical literature …

BioC interoperability track overview

DC Comeau, RT Batista-Navarro, HJ Dai… - Database, 2014 - academic.oup.com
BioC is a new simple XML format for sharing biomedical text and annotations and libraries to
read and write that format. This promotes the development of interoperable tools for natural …

[PDF][PDF] An inference method for disease name normalization

RI Dogan, Z Lu - 2012 AAAI Fall Symposium Series, 2012 - cdn.aaai.org
PubMed® and other literature databases contain a wealth of information on diseases and
their diagnosis/treatment in the form of scientific publications. In order to take advantage of …

Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora

R Islamaj Doğan, DC Comeau, L Yeganova… - Database, 2014 - academic.oup.com
BioC is a recently created XML format to share text data and annotations, and an
accompanying input/output library to promote interoperability of data and tools for natural …

Bioc implementations in go, perl, python and ruby

W Liu, R Islamaj Doğan, D Kwon, H Marques… - Database, 2014 - academic.oup.com
As part of a communitywide effort for evaluating text mining and information extraction
systems applied to the biomedical domain, BioC is focused on the goal of interoperability …

Disambiguation of medical abbreviations for knowledge organization

Y Li, H Wang, X Li, S Deng, T Su, W Zhang - Information Processing & …, 2023 - Elsevier
The disambiguation of abbreviations is a crucial step in medical knowledge organization. In
the past, most scholars have focused on the problem of disambiguating medical …

Initialism disambiguation: Man versus machine

Y HaCohen‐Kerner, A Kass… - Journal of the American …, 2013 - Wiley Online Library
Disambiguation of ambiguous initialisms and acronyms is critical to the proper
understanding of various types of texts. A model that attempts to solve this has previously …

[HTML][HTML] Evaluation and cross-comparison of lexical entities of biological interest (LexEBI)

D Rebholz-Schuhmann, JH Kim, Y Yan, A Dixit… - PLoS …, 2013 - journals.plos.org
Motivation Biomedical entities, their identifiers and names, are essential in the
representation of biomedical facts and knowledge. In the same way, the complete set of …

BLAR: Biomedical local acronym resolver

W Hogan, YV Baeza, Y Katsis, T Baldwin… - Proceedings of the …, 2021 - aclanthology.org
NLP has emerged as an essential tool to extract knowledge from the exponentially
increasing volumes of biomedical texts. Many NLP tasks, such as named entity recognition …