[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing
DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …
of such text has become so great that it is no longer economically feasible to have a human …
[PDF][PDF] An improved corpus of disease mentions in PubMed citations
RI Dogan, Z Lu - BioNLP: Proceedings of the 2012 Workshop on …, 2012 - aclanthology.org
The latest discoveries on diseases and their diagnosis/treatment are mostly disseminated in
the form of scientific publications. However, with the rapid growth of the biomedical literature …
the form of scientific publications. However, with the rapid growth of the biomedical literature …
BioC interoperability track overview
DC Comeau, RT Batista-Navarro, HJ Dai… - Database, 2014 - academic.oup.com
BioC is a new simple XML format for sharing biomedical text and annotations and libraries to
read and write that format. This promotes the development of interoperable tools for natural …
read and write that format. This promotes the development of interoperable tools for natural …
[PDF][PDF] An inference method for disease name normalization
RI Dogan, Z Lu - 2012 AAAI Fall Symposium Series, 2012 - cdn.aaai.org
PubMed® and other literature databases contain a wealth of information on diseases and
their diagnosis/treatment in the form of scientific publications. In order to take advantage of …
their diagnosis/treatment in the form of scientific publications. In order to take advantage of …
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora
R Islamaj Doğan, DC Comeau, L Yeganova… - Database, 2014 - academic.oup.com
BioC is a recently created XML format to share text data and annotations, and an
accompanying input/output library to promote interoperability of data and tools for natural …
accompanying input/output library to promote interoperability of data and tools for natural …
Bioc implementations in go, perl, python and ruby
W Liu, R Islamaj Doğan, D Kwon, H Marques… - Database, 2014 - academic.oup.com
As part of a communitywide effort for evaluating text mining and information extraction
systems applied to the biomedical domain, BioC is focused on the goal of interoperability …
systems applied to the biomedical domain, BioC is focused on the goal of interoperability …
Disambiguation of medical abbreviations for knowledge organization
Y Li, H Wang, X Li, S Deng, T Su, W Zhang - Information Processing & …, 2023 - Elsevier
The disambiguation of abbreviations is a crucial step in medical knowledge organization. In
the past, most scholars have focused on the problem of disambiguating medical …
the past, most scholars have focused on the problem of disambiguating medical …
Initialism disambiguation: Man versus machine
Y HaCohen‐Kerner, A Kass… - Journal of the American …, 2013 - Wiley Online Library
Disambiguation of ambiguous initialisms and acronyms is critical to the proper
understanding of various types of texts. A model that attempts to solve this has previously …
understanding of various types of texts. A model that attempts to solve this has previously …
[HTML][HTML] Evaluation and cross-comparison of lexical entities of biological interest (LexEBI)
Motivation Biomedical entities, their identifiers and names, are essential in the
representation of biomedical facts and knowledge. In the same way, the complete set of …
representation of biomedical facts and knowledge. In the same way, the complete set of …
BLAR: Biomedical local acronym resolver
W Hogan, YV Baeza, Y Katsis, T Baldwin… - Proceedings of the …, 2021 - aclanthology.org
NLP has emerged as an essential tool to extract knowledge from the exponentially
increasing volumes of biomedical texts. Many NLP tasks, such as named entity recognition …
increasing volumes of biomedical texts. Many NLP tasks, such as named entity recognition …